nlmixr2 / nlmixr2est

nlmixr2 estimation routines
https://nlmixr2.github.io/nlmixr2est/
GNU General Public License v2.0
7 stars 3 forks source link

CRAN #411

Closed mattfidler closed 10 months ago

mattfidler commented 11 months ago

Please see the problems shown on

https://cran.r-project.org/web/checks/check_results_nlmixr2est.html

Please correct before 2023-12-11 to safely retain your package on CRAN.

mattfidler commented 11 months ago
checkRd: (-1) foceiControl.Rd:176: Lost braces; missing escapes or markup?
     176 |     v_{scaled} = (v_{unscaled}-C_{1})/C_{2}
         |       ^
  checkRd: (-1) foceiControl.Rd:176: Lost braces; missing escapes or markup?
     176 |     v_{scaled} = (v_{unscaled}-C_{1})/C_{2}
         |                     ^
  checkRd: (-1) foceiControl.Rd:176: Lost braces; missing escapes or markup?
     176 |     v_{scaled} = (v_{unscaled}-C_{1})/C_{2}
         |                                  ^
  checkRd: (-1) foceiControl.Rd:176: Lost braces; missing escapes or markup?
     176 |     v_{scaled} = (v_{unscaled}-C_{1})/C_{2}
         |                                         ^
  checkRd: (-1) foceiControl.Rd:183: Lost braces; missing escapes or markup?
     183 |     v_{scaled} = (v_{unscaled}-C_{1})/C_{2};
         |       ^
  checkRd: (-1) foceiControl.Rd:183: Lost braces; missing escapes or markup?
     183 |     v_{scaled} = (v_{unscaled}-C_{1})/C_{2};
         |                     ^
  checkRd: (-1) foceiControl.Rd:183: Lost braces; missing escapes or markup?
     183 |     v_{scaled} = (v_{unscaled}-C_{1})/C_{2};
         |                                  ^
  checkRd: (-1) foceiControl.Rd:183: Lost braces; missing escapes or markup?
     183 |     v_{scaled} = (v_{unscaled}-C_{1})/C_{2};
         |                                         ^
  checkRd: (-1) foceiControl.Rd:191: Lost braces; missing escapes or markup?
     191 |     C_{1} = (max(all unscaled values)+min(all unscaled values))/2
         |       ^
  checkRd: (-1) foceiControl.Rd:193: Lost braces; missing escapes or markup?
     193 |     C_{2} = (max(all unscaled values) - min(all unscaled values))/2
         |       ^
  checkRd: (-1) foceiControl.Rd:200: Lost braces; missing escapes or markup?
     200 |     C_{1} = min(all unscaled values)
         |       ^
  checkRd: (-1) foceiControl.Rd:202: Lost braces; missing escapes or markup?
     202 |     C_{2} = max(all unscaled values) - min(all unscaled values)
         |       ^
  checkRd: (-1) foceiControl.Rd:209: Lost braces; missing escapes or markup?
     209 |     C_{1} = mean(all unscaled values)
         |       ^
  checkRd: (-1) foceiControl.Rd:211: Lost braces; missing escapes or markup?
     211 |     C_{2} = max(all unscaled values) - min(all unscaled values)
         |       ^
  checkRd: (-1) foceiControl.Rd:216: Lost braces; missing escapes or markup?
     216 |     C_{1} = mean(all unscaled values)
         |       ^
  checkRd: (-1) foceiControl.Rd:218: Lost braces; missing escapes or markup?
     218 |     C_{2} = sd(all unscaled values)
         |       ^
  checkRd: (-1) foceiControl.Rd:224: Lost braces; missing escapes or markup?
     224 |     C_{1} = 0
         |       ^
  checkRd: (-1) foceiControl.Rd:226: Lost braces; missing escapes or markup?
     226 |     C_{2} = sqrt(v_1^2 + v_2^2 + ... + v_n^2)
         |       ^
  checkRd: (-1) foceiControl.Rd:231: Lost braces; missing escapes or markup?
     231 |     C_{1} = 0
         |       ^
  checkRd: (-1) foceiControl.Rd:233: Lost braces; missing escapes or markup?
     233 |     C_{2} = 1
         |       ^
  checkRd: (-1) foceiControl.Rd:242: Lost braces; missing escapes or markup?
     242 |    v_{scaled} = (v_{current} - v_{init})/scaleC[i] + scaleTo
         |      ^
  checkRd: (-1) foceiControl.Rd:242: Lost braces; missing escapes or markup?
     242 |    v_{scaled} = (v_{current} - v_{init})/scaleC[i] + scaleTo
         |                    ^
  checkRd: (-1) foceiControl.Rd:242: Lost braces; missing escapes or markup?
     242 |    v_{scaled} = (v_{current} - v_{init})/scaleC[i] + scaleTo
         |                                  ^
  checkRd: (-1) foceiControl.Rd:257: Lost braces; missing escapes or markup?
     257 |   v_{scaled} = v_{current}/v_{init}*scaleTo
         |     ^
  checkRd: (-1) foceiControl.Rd:257: Lost braces; missing escapes or markup?
     257 |   v_{scaled} = v_{current}/v_{init}*scaleTo
         |                  ^
  checkRd: (-1) foceiControl.Rd:257: Lost braces; missing escapes or markup?
     257 |   v_{scaled} = v_{current}/v_{init}*scaleTo
         |                              ^
  checkRd: (-1) foceiControl.Rd:264: Lost braces; missing escapes or markup?
     264 |   v_{scaled} = (v_{current}-v_{init}) + scaleTo
         |     ^
  checkRd: (-1) foceiControl.Rd:264: Lost braces; missing escapes or markup?
     264 |   v_{scaled} = (v_{current}-v_{init}) + scaleTo
         |                   ^
  checkRd: (-1) foceiControl.Rd:264: Lost braces; missing escapes or markup?
     264 |   v_{scaled} = (v_{current}-v_{init}) + scaleTo
         |                               ^
  checkRd: (-1) foceiControl.Rd:268: Lost braces; missing escapes or markup?
     268 |    v_{scaled} = v_{current}/v_{init}*scaleTo
         |      ^
  checkRd: (-1) foceiControl.Rd:268: Lost braces; missing escapes or markup?
     268 |    v_{scaled} = v_{current}/v_{init}*scaleTo
         |                   ^
  checkRd: (-1) foceiControl.Rd:268: Lost braces; missing escapes or markup?
     268 |    v_{scaled} = v_{current}/v_{init}*scaleTo
         |                               ^
  checkRd: (-1) nlmixr2Gill83.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly
  checkRd: (-1) nlmixr2Gill83.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly
  checkRd: (-1) nlmixr2Gill83.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly
  checkRd: (-1) nlmixr2Gill83.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly
  checkRd: (-1) nlmixr2Gill83.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
  checkRd: (-1) nlmixr2Gill83.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly
  checkRd: (-1) nlmixr2Gill83.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly
  checkRd: (-1) nlmixr2Gill83.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
  checkRd: (-1) nlmixr2Gill83.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly
  checkRd: (-1) nlmixr2Gill83.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly
  checkRd: (-1) nlmixr2Gill83.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly
  checkRd: (-1) nlmixr2Gill83.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
  checkRd: (-1) nlmixr2Gill83.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly
  checkRd: (-1) nlmixr2Gill83.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly
  checkRd: (-1) nlmixr2Gill83.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
Flavors: [r-devel-linux-x86_64-debian-clang](https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/nlmixr2est-00check.html), [r-devel-linux-x86_64-debian-gcc](https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/nlmixr2est-00check.html)

Version: 2.1.8
Check: whether package can be installed
Result: WARN 
  Found the following significant warnings:
    rprintf.c:49:13: warning: conversion lacks type at end of format [-Wformat=]
    rprintf.c:49:15: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘int’ [-Wformat=]
    rprintf.c:49:11: warning: too many arguments for format [-Wformat-extra-args]
  See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/nlmixr2est.Rcheck/00install.out’ for details.
  * used C compiler: ‘gcc-13 (Debian 13.2.0-5) 13.2.0’
  * used C++ compiler: ‘g++-13 (Debian 13.2.0-5) 13.2.0’
Flavor: [r-devel-linux-x86_64-debian-gcc](https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/nlmixr2est-00check.html)

Version: 2.1.8
Check: whether package can be installed
Result: WARN 
  Found the following significant warnings:
    rprintf.c:44:11: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
    rprintf.c:49:19: warning: data argument not used by format string [-Wformat-extra-args]
    rprintf.c:55:11: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
    RcppExports.cpp:59:18: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
  See ‘/data/gannet/ripley/R/packages/tests-clang/nlmixr2est.Rcheck/00install.out’ for details.
  * used C compiler: ‘clang version 17.0.5’
  * used C++ compiler: ‘clang version 17.0.5’
Flavor: [r-devel-linux-x86_64-fedora-clang](https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/nlmixr2est-00check.html)

Version: 2.1.8
Check: whether package can be installed
Result: WARN 
  Found the following significant warnings:
    rprintf.c:49:13: warning: conversion lacks type at end of format [-Wformat=]
    rprintf.c:49:15: warning: format '%s' expects argument of type 'char *', but argument 2 has type 'int' [-Wformat=]
    rprintf.c:49:11: warning: too many arguments for format [-Wformat-extra-args]