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nlmixr2 / nonmem2rx

nonmem2rx
https://nlmixr2.github.io/nonmem2rx/
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FYI inlined fns (and added as contributor) #11

Closed mattfidler closed 1 year ago

mattfidler commented 1 year ago

Hi @philipdelff

FYI, I changed and inline and modified the functions here:

https://github.com/nlmixr2/nonmem2rx/blob/main/R/nmtab.R

https://github.com/nlmixr2/nonmem2rx/blob/main/R/readCov.R

I mentioned you as an author and added you as a contributor

The one above should probably make it in some version back to your excellent NMdata since reading the theta covariance matrix can be used to simulate clinical trials with uncertainty.

philipdelff commented 1 year ago

Thanks @mattfidler,

Let me know if I can be of any further help. NMdata could have more of interest - as is or after a bit of modification. Happy to discuss.

Best, Philip

mattfidler commented 1 year ago

Sure, the only modification I have to make it more general is to drop the first column (optionally).

This is to allow your reader to handle nonmem's '.cov' files.

I have a pull request

https://github.com/philipdelff/NMdata/pull/41

If you want to discuss there, that is fine.

These are needed to simulate with uncertainty in your parameter estimates with rxode2 and other sorts of packages.

This package allows automatic translation of NONMEM to rxode2, while validating the model is giving the correct results. The information will be read in and will allow simulation with uncertainty if you wish it.