Non-standard 1-based start position in bed files

nloyfer / wgbs_tools

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

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Non-standard 1-based start position in bed files #37

Open GWW opened 1 year ago

GWW commented 1 year ago

Hi,

I believe the bed files emitted from this tool use a non-standard start and end position. The bed files from wgbs_tools appear to be 1-based for the start when they should be zero-based. I imagine it would be a lot of work to correct this, but it would be helpful to users to note this in the README to avoid potential downstream issues.