About defining cell-type-specific hypermethylated sites.

nloyfer / wgbs_tools

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

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Closed GleeenSIBS closed 1 year ago

GleeenSIBS commented 1 year ago

Can wgbs_tools find cell-type-specific hypermethylated sites? Which subcommand to use?

nloyfer commented 1 year ago

wgbstools find_markers --only_hyper ...