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nloyfer / wgbs_tools

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
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groups file format #45

Closed assafgrw closed 1 year ago

assafgrw commented 1 year ago

Hello, I am straggling with the groups file. I was trying all sorts of formats (full beta file name at the name column, partial, prefix only ect.) and I keep getting the following error: " Error: 2 prefixes from groups file were not found in input bins: Adipocytes-Z000000T7 Blood-NK-Z000000UF Invalid input argument groups file mismatch binary files"

Any ideas? can you share an example for a group file?

AndriesDeKoker commented 1 year ago

I think it is like this:

name,group GSM5652176_Adipocytes-Z000000T7,Adipocytes