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nloyfer / wgbs_tools

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
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While running bam2pat on ML and MM tag containing bam file ,reads information is printed on the terminal. #53

Closed vinodsinghjnu closed 11 months ago

vinodsinghjnu commented 1 year ago

@ Hi, I am getting read information printed on the terminal while running the bam2pat command, is there any way to stop this printing? Or this is due to the presence of ''Unknown CIGAR character: = ' in the BAM file which is not recognised by WGBStools. Screenshot 2023-10-02 at 17 09 26

nloyfer commented 11 months ago

Same problem as in https://github.com/nloyfer/wgbs_tools/issues/52