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nloyfer / wgbs_tools

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
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bam2pat FileNotFoundError #54

Open qyJING123 opened 9 months ago

qyJING123 commented 9 months ago

I got an error as "FileNotFoundError: [Errno 2] No such file or directory: '/home/qyjing/softwares/wgbs_tools/references/default'", even though I have set the parameter "--genome hg19 ". Before I run bam2pat, i have already initiate the genome using my own downloaded fasta file as follows: wgbstools init_genome hg19 --fasta_path /path/to/hg19.fa

And yes, there is no "default" folder under the references folder. How should I solve the porblem?

assafgrw commented 3 months ago

I am having a similar error after I was updating the tool.

Have you managed to solve this?