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nloyfer / wgbs_tools

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
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wgbstools for single base DNA methylation #70

Closed hengbingao closed 1 month ago

hengbingao commented 2 months ago

Hi, wgbstools is a good tool for DNA methylation data analysis, but I wonder if it could generate single base CG and CH methylation allc files which are compatiable to bismark and methylpy? Or if it is just suitable for some big genomic region DNA methylation analysis?

thanks!

nloyfer commented 1 month ago

Hi @hengbingao , Unfortunately, wgbstools only supports CpG methylation at the moment.