All ttest values generated from `wgbstools find_markers` are NAs

nloyfer / wgbs_tools

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

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All ttest values generated from `wgbstools find_markers` are NAs #71

Closed Liying1996 closed 1 month ago

Liying1996 commented 1 month ago

Hi,

Thanks for developing this tool! I'm currently working with the findmarkers function, and I've encountered an issue with the t-test results column. It seems that all values in the t-test column are showing as "NA".
I've checked my data input and the parameters used for the findmarkers function, but I couldn't find any obvious reasons. I'm wondering if you could provide some insights into why this might be happening.
Thanks a lot!

Best, YL

Liying1996 commented 1 month ago

Now I get it, background / target group needs replicates