how to solve /wgbs_tools/references/hg19/CpG.bed.gz

nloyfer / wgbs_tools

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

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how to solve /wgbs_tools/references/hg19/CpG.bed.gz #82

Closed Taaannnuuujjjjaa closed 1 week ago

Taaannnuuujjjjaa commented 3 months ago

$ wgbstools vis -r chr4:83821889-83841122 GSE186458_RAW/GSM5652221_Oligodendrocytes-Z0000042L.pat.gz Invalid input argument Invalid reference path: /hdfs3/data/biodata/wgbs_tools/references/hg19/CpG.bed.gz

yonniejon commented 1 month ago

Hi. did you run the command wgbstools init_genome hg19? In general wgbstools requires there to be a reference genome directory with several files created by the init_genome command. Your error is saying that one of the required files does not exist.