beta_to_450k update - Githubissues

nloyfer / wgbs_tools

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

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beta_to_450k update #9

Closed JBinkowski closed 2 years ago

JBinkowski commented 2 years ago

Dear Author, Could You please update the reference used in beta_to_450k script, to work with Illumina EPIC data?

nloyfer commented 2 years ago

Hi, Absolutely. I updated wgbstools beta_to_450k to include all 850K EPIC sites. If you provide a user site reference file (--ref flag) that includes sites from EPIC, they will now be included in the output. If you don't provide your own reference file, you have to set the --EPIC flag, so that all ~850K sites will be included, instead of 450K.

I also added beta_to_450k support for hg38.

Let me know if it works for you

JBinkowski commented 2 years ago

Yes, it works! Thanks for upgrade.