nlplab / brat

brat rapid annotation tool (brat) - for all your textual annotation needs
http://brat.nlplab.org
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Entity attribute selection triggers type change #983

Open TomokoOhta opened 11 years ago

TomokoOhta commented 11 years ago

It's not happening always, but in some cases when I check the Non-name attribute for GGP, the type is automatically changed to another. Similar to #982, still not yet sure when/why it happens, but got the impression that this could be an early symptom of timeout issue #981. Will report when I meet this next time.

spyysalo commented 11 years ago

Might be a misfiring of the code that aims to block setting entity-only attributes for events and vice versa. Can't tell why this would specifically be related to rapid annotation mode timeouts, though.

TomokoOhta commented 11 years ago

This happened on 17.47, Thu 29 Nov. (UK time) when I've annotated below (on ohta-master installation accessed from OSX@office);

Added the following line(s): 
A1  Nonname T11Changed the following line(s): 
T11 Simple_chemical 121 152 benzo[c]phenanthridine alkaloid 
Into: 
T11 Anatomical_entity 121 152   benzo[c]phenanthridine alkaloid

and just after reporting above, similar type change on an event also happened as below;

Added the following line(s): 
A2  Speculation E5Changed the following line(s): 
T36 Regulation 310 317  effects 
Into: 
T36 Protein_or_small_molecule_production_or_breakdown 310 317   effects 
T36 Regulation 310 317  effects 
Into: 
E5  Protein_or_small_molecule_production_or_breakdown:T36
TomokoOhta commented 11 years ago

in 18.23, it suddenly replicated as below even it didn't happen on many other annotations without reloading;

Added the following line(s): 
T77 Positive_regulation 1397 1406   induction 
E15 Positive_regulation:T77 
A3  Speculation E15
TomokoOhta commented 11 years ago

and again in 18.31;

Added the following line(s): 
A4  Negation E28Changed the following line(s): 
T89 Localization 1907 1918  disappeared 
Into: 
T89 Protein_or_small_molecule_production_or_breakdown 1907 1918 disappeared 
T89 Localization 1907 1918  disappeared 
Into: 
E28 Protein_or_small_molecule_production_or_breakdown:T89
TomokoOhta commented 11 years ago

at 15.39, 30 Nov. in Apoptosis-set-3/16489021, an entity type GGP changed into Anatomical_entity when I've added Non-name attribute;

Added the following line(s): 
A5  Nonname T14Changed the following line(s): 
T14 Gene_or_gene_product 888 891    MYC 
Into: 
T14 Anatomical_entity 888 891   MYC