Log request for submission 9712812

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Where NLP Sandbox users can request submission logs, share ideas and report issues.

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Log request for submission 9712812 #5

Closed gkowalski closed 3 years ago

gkowalski commented 3 years ago

Request details

Tool type (select one)
- [ x] NLP Sandbox PHI annotator
- [ ] NLP Sandbox date annotator
- [ ] NLP Sandbox person name annotator
- [ ] NLP Sandbox location annotator
- [ ] NLP Sandbox contact annotator
- [ ] NLP Sandbox ID annotator
Submission id: 9712812
Submitter user/team handle: MCW Team
Submission status:
- Column Status:
- Column MCW Status
Requesting logs for the following dataset(s):
- [x] i2b2-phi
- [ ] mcw-phi

The logs will be sent to the email address gkowalski@synapse.org.

Additional information

tschaffter commented 3 years ago

@gkowalski Please review your request. I was thinking that I should clarify how to fill in checkboxes. Also you are asking for the log generated by a tool. This tool can only be of one type (thus the "select one").

thomasyu888 commented 3 years ago

@gkowalski Your submission ran out of time quota (which is 2 hours...), but it doesn't actually look like your submission ran for that long... Ill have to look into this, something is fishy about the infra.

gkowalski commented 3 years ago

My code is poorly written, loading the nlp model for each request instead of catching it once on startup. Need to work on getting flask to do what I want.

gkowalski commented 3 years ago

I've resubmitted the same Docker image again today per @thomasyu888 suggestion. Have not received any feedback other than the initial email stating "Dear MCW Team: Your submission (submission ID 9712826) is in progress" the logs were produced https://www.synapse.org/#!Synapse:syn26010942 showing no errors ..