search

nmdp-bioinformatics / ImmunogeneticDataTools

Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium
11 stars 7 forks source link

Consider implementing using any existing object representations of GL String #1

Closed mpresteg closed 9 years ago

mpresteg commented 9 years ago

Current implementation uses a flat GL String structure, ultimately decomposing into lists of alleles using delimiters. This is sufficient for purposes of reporting on Linkage Disequilibrium, but may be deficient for further uses.

Consider using: https://code.google.com/p/genotype-list/

mpresteg commented 9 years ago

MultiLocusUnphasedGenotype support added.