HML Spec: How should sequence data that is 'unsure' be reported. For example there are known issues with some sequencers with multiple 'G' bases where it is unknown how many 'G's are in a row. How to identify this?

nmdp-bioinformatics / dash

Data Standards Hackathon for NGS based typing.

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HML Spec: How should sequence data that is 'unsure' be reported. For example there are known issues with some sequencers with multiple 'G' bases where it is unknown how many 'G's are in a row. How to identify this? #13

Closed dvaliga closed 9 years ago

mmaiers-nmdp commented 10 years ago

There was some discussion about adding quality variables (one float per position) as optional attributes of a consensus sequence. More work to be done on this

ghost commented 10 years ago

See https://github.com/nmdp-bioinformatics/hml/issues/11

ghost commented 9 years ago

Upstream issue closed; fixed with HML version 1.0, see https://github.com/nmdp-bioinformatics/hml/issues/26