HML Spec: Allele-db and allele-version currently exist for interpretation. These are also useful associated directly with a consensus-sequence and should be added as attributes to consensus-sequence.

nmdp-bioinformatics / dash

Data Standards Hackathon for NGS based typing.

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HML Spec: Allele-db and allele-version currently exist for interpretation. These are also useful associated directly with a consensus-sequence and should be added as attributes to consensus-sequence. #9

Closed dvaliga closed 10 years ago

ghost commented 10 years ago

I'm not sure I see the use case for allele-db and allele-version on consensus sequence. Might such be provided here?

mmaiers-nmdp commented 10 years ago

Some algorithms that produce consensus from short reads depend on IMGT/HLA. This may change with the version of IMGT/HLA used. The use case for allele-db and allele-version on consensus sequence would be in the case where the version used to create the consensus is updated/rebuilt. And this can differ from the version on interpretation (e.g. reinterpretation).

ghost commented 10 years ago

See https://github.com/nmdp-bioinformatics/hml/issues/18

ghost commented 10 years ago

Fixed downstream