nmdp-bioinformatics / genotype-list

Genotype List service, client library, and command line tools.
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registered gl string disappeared #233

Open chiajungchang opened 7 years ago

chiajungchang commented 7 years ago

I registered a gl string last week (03-2x-2017) and the returned id is https://gl.nmdp.org/imgt-hla/3.24.0/multilocus-unphased-genotype/6.

It worked normally. I got the data I need with the link "https://gl.nmdp.org/imgt-hla/3.24.0/multilocus-unphased-genotype/6.json" or .html.

However, the content becomes "Multilocus unphased genotype not found" now and I get a "500 Internal Error" when trying to register the same gl-string with the command "curl -X POST -d "HLA-A02:01:01:01+HLA-A24:02:01:05" https://gl.nmdp.org/imgt-hla/3.24.0/multilocus-unphased-genotype"

Thank for your help.

heuermh commented 7 years ago

@chiajungchang Thanks for reporting this issue!

heuermh commented 7 years ago

The URLs

https://gl.nmdp.org/imgt-hla/3.24.0/multilocus-unphased-genotype/6.html https://gl.nmdp.org/imgt-hla/3.24.0/multilocus-unphased-genotype/6.json

resolve properly for me now.

Fixed by @jasonbrelsford in deployment work.

{"id":"https://gl.nmdp.org/imgt-hla/3.24.0/multilocus-unphased-genotype/6",
"glstring":"HLA-A*02:01:01:01+HLA-A*24:02:01:05","genotypeLists":[{"genotypeList":
"https://gl.nmdp.org/imgt-hla/3.24.0/genotype-list/10"}]}

@bmilius-nmdp can you review and close?

chiajungchang commented 7 years ago

Great! The URLs works fine now. Thank you.

What left is the liftover service problem.

I got the json {"sourceNamespace":"http://gl.nmdp.org/imgt-hla/3.24.0/","sourceUri":"https://gl.nmdp.org/imgt-hla/3.24.0/multilocus-unphased-genotype/6","targetNamespace":"https://gl.nmdp.org/imgt-hla/3.25.0/","targetUri":"https://gl.nmdp.org/imgt-hla/3.25.0/multilocus-unphased-genotype/h5"}

using the liftover service.

The GL string with https://gl.nmdp.org/imgt-hla/3.24.0/multilocus-unphased-genotype/6 is A02:01:01:01+HLA-A24:02:01:05, but the gl string for https://gl.nmdp.org/imgt-hla/3.25.0/multilocus-unphased-genotype/h5 is DPA101:03:01:03+HLA-A24:02:01:05.

Best, John

On Mar 27, 2017, at 2:10 PM, Michael L Heuer notifications@github.com<mailto:notifications@github.com> wrote:

The URLs

https://gl.nmdp.org/imgt-hla/3.24.0/multilocus-unphased-genotype/6.html https://gl.nmdp.org/imgt-hla/3.24.0/multilocus-unphased-genotype/6.json

resolve properly for me now.

Fixed by @jasonbrelsfordhttps://github.com/jasonbrelsford in deployment work.

{"id":"https://gl.nmdp.org/imgt-hla/3.24.0/multilocus-unphased-genotype/6", "glstring":"HLA-A02:01:01:01+HLA-A24:02:01:05","genotypeLists":[{"genotypeList": "https://gl.nmdp.org/imgt-hla/3.24.0/genotype-list/10"}]}

@bmilius-nmdphttps://github.com/bmilius-nmdp can you review and close?

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