nmdp-bioinformatics / gfe-db

Graph database representing IPD-IMGT/HLA sequence data as GFE
https://gfe-db.readthedocs.io
GNU General Public License v3.0
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Model that uses the SV name in places of the ID for IPD_accession #104

Open mmaiers-nmdp opened 6 months ago

mmaiers-nmdp commented 6 months ago

image

mmaiers-nmdp commented 4 months ago

this query reveals one of many cases where the GFE-SEQUENCE relationship is not 1-to-1

match (g:GFE) - [] - (s:Sequence), (g:GFE) - [] - (s2:Sequence)  where s <> s2 and s.name <> s2.name 
and g.name= "HLA-Bw0-0-0-619-325-3335-0-0-0-0-0-0-0-0-0"
    return s, g, s2 

Issues:

image