search

nmdp-bioinformatics / gfe-db

Graph database representing IPD-IMGT/HLA sequence data as GFE
https://gfe-db.readthedocs.io
GNU General Public License v3.0
9 stars 15 forks source link

Determine build details for mhalagan1nmdp/gfe-base image #32

Open jbrelsf2-nmdp opened 5 years ago

jbrelsf2-nmdp commented 5 years ago

The current docker image for gfe is mhalagan1nmdp/gfe-base. The process to create this image is not clear. Prefer to use either a supported image or at least a Dockerfile to show parameters and process.

Determine what supported base image will function as base for gfe. ie. Biostars or other.

Docker inspect output:

[ { "Id": "sha256:63a6988c884f18442b953b297480c6f396b2335e32f8acd1abccc72aca525411", "RepoTags": [ "mhalagan1nmdp/gfe-base:latest" ], "RepoDigests": [ "mhalagan1nmdp/gfe-base@sha256:8267425e1e5388a19490fbd842949d274841b05bfcf83d2132499586490030aa" ], "Parent": "", "Comment": "", "Created": "2018-08-10T17:41:19.7149471Z", "Container": "5ab0c2f9f2971c537424325d0578fcafd586901f810dbdef26450d35d08bcd50", "ContainerConfig": { "Hostname": "", "Domainname": "", "User": "", "AttachStdin": false, "AttachStdout": false, "AttachStderr": false, "Tty": false, "OpenStdin": false, "StdinOnce": false, "Env": [ "PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/lib/jvm/java-1.8-openjdk/jre/bin:/usr/lib/jvm/java-1.8-openjdk/bin", "LANG=C.UTF-8", "JAVA_HOME=/usr/lib/jvm/java-1.8-openjdk/jre", "JAVA_VERSION=8u171", "JAVA_ALPINE_VERSION=8.171.11-r0", "NEO4J_HOME=/var/lib/neo4j", "NEO4J_BIN=/var/lib/neo4j/bin", "NEO4J_CONF=/opt/conf", "PERL5LIB=/usr/local/lib/perl5", "NEO4J_SHA256=f0d79b4a98672dc527b708113644b8961ba824668c354e61dc4d2a16d8484880", "NEO4J_TARBALL=neo4j-community-3.1.3-unix.tar.gz" ], "Cmd": [ "|1", "NEO4J_URI=http://dist.neo4j.org/neo4j-community-3.1.3-unix.tar.gz", "/bin/sh", "-c", "curl --fail --silent --show-error --location --remote-name ${NEO4J_URI} && echo \"${NEO4J_SHA256} ${NEO4J_TARBALL}\" | sha256sum -csw - && tar --extract --file ${NEO4J_TARBALL} --directory /var/lib && mv /var/lib/neo4j-* /var/lib/neo4j && rm ${NEO4J_TARBALL}" ], "ArgsEscaped": true, "Image": "sha256:83090b24af556c156bbc62751b1ec8a1276c614f4e98bbd247d8812e4650817f", "Volumes": null, "WorkingDir": "", "Entrypoint": null, "OnBuild": [], "Labels": null }, "DockerVersion": "18.06.0-ce", "Author": "", "Config": { "Hostname": "", "Domainname": "", "User": "", "AttachStdin": false, "AttachStdout": false, "AttachStderr": false, "Tty": false, "OpenStdin": false, "StdinOnce": false, "Env": [ "PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/lib/jvm/java-1.8-openjdk/jre/bin:/usr/lib/jvm/java-1.8-openjdk/bin", "LANG=C.UTF-8", "JAVA_HOME=/usr/lib/jvm/java-1.8-openjdk/jre", "JAVA_VERSION=8u171", "JAVA_ALPINE_VERSION=8.171.11-r0", "NEO4J_HOME=/var/lib/neo4j", "NEO4J_BIN=/var/lib/neo4j/bin", "NEO4J_CONF=/opt/conf", "PERL5LIB=/usr/local/lib/perl5", "NEO4J_SHA256=f0d79b4a98672dc527b708113644b8961ba824668c354e61dc4d2a16d8484880", "NEO4J_TARBALL=neo4j-community-3.1.3-unix.tar.gz" ], "Cmd": [ "/bin/sh" ], "ArgsEscaped": true, "Image": "sha256:83090b24af556c156bbc62751b1ec8a1276c614f4e98bbd247d8812e4650817f", "Volumes": null, "WorkingDir": "", "Entrypoint": null, "OnBuild": [], "Labels": null }, "Architecture": "amd64", "Os": "linux", "Size": 706381962, "VirtualSize": 706381962, "GraphDriver": { "Data": { "LowerDir": "/var/lib/docker/overlay2/711d16e5cb521f1adce964f96963aefa3900a6cc385d6aa5d90642517bc0b2fb/diff:/var/lib/docker/overlay2/2243ce81f133a045e063ffc822178e10d83b3fee2ccb00ae4b280366d5a868e8/diff:/var/lib/docker/overlay2/2e2ae7bc4607fe06930d6e4f7f0996d4768ad612113d4877285ccb77581ca359/diff:/var/lib/docker/overlay2/bce7478d8c4e93980131eec480a07de595505862e7974fbf0bdd3c1d956df2a4/diff:/var/lib/docker/overlay2/20b5d8f64d512815bad7fd3d0a41c5fd90b63e6093efe4f92f6b6658427d443d/diff:/var/lib/docker/overlay2/cef5133e8199870c646abee4f0b5dec2bee8b00e8c310678f18eccc82b831fef/diff:/var/lib/docker/overlay2/3b1ada4d5639535daeca32602d944763eb619c780b91e92f3abee24034167d9b/diff:/var/lib/docker/overlay2/01d21f5a425fbfeefb49035b4d575547c5b8e717ef56f274a2b3168a1bd59013/diff:/var/lib/docker/overlay2/85f835584c74d989f14cbf0d3e847e0acca05bb7314e9922d7a6b3fd0b939d72/diff:/var/lib/docker/overlay2/fd87d5d7e61533c2086b9901ebe8612ec6d2da8dd809b7acd7c76202e32aad3e/diff:/var/lib/docker/overlay2/192fef0f33c9daad8e9a1954c03c12653c5827d85c8e4da8114674466875613a/diff:/var/lib/docker/overlay2/bc84870a511ebf6f11d551840420c7871c8f1ffc8070d62df8d5319d811ae1b5/diff", "MergedDir": "/var/lib/docker/overlay2/f94a55aa7d6963b8d842097eae5dda9c3c44cc386f3a1b4de5c4bcf8ecd083f2/merged", "UpperDir": "/var/lib/docker/overlay2/f94a55aa7d6963b8d842097eae5dda9c3c44cc386f3a1b4de5c4bcf8ecd083f2/diff", "WorkDir": "/var/lib/docker/overlay2/f94a55aa7d6963b8d842097eae5dda9c3c44cc386f3a1b4de5c4bcf8ecd083f2/work" }, "Name": "overlay2" }, "RootFS": { "Type": "layers", "Layers": [ "sha256:73046094a9b835e443af1a9d736fcfc11a994107500e474d0abf399499ed280c", "sha256:298c3bb2664fb7f8514ecdde8b76c0ca95c7c7b82eaa326a7e9661e017488164", "sha256:8bc7bbcd76b68a51a3b70de9f19faed58f9c0795802dbff98de584b7e7eb9c22", "sha256:b3172664e2ad45e51dc46686bebf11231dbd000c13239772a4ec318901382e58", "sha256:ac0d1b2aab0db0d7438a0c89f1ebd9da76817a76584239f3d7360db37a5320a7", "sha256:78d94cc58065c68602c206ae196c82327a301b787f58a3b294f56a4ff0d97c2b", "sha256:86efa0e0ddf3a27be6883f3b45e536182042cfcf4938c1985502e8b02402ce87", "sha256:06756165bbd57798160448cc79367b58da25839f10ffd25c988124c2743e5bb9", "sha256:0189aa2a14adedb001e4b16c95c88b268211a12a33936436d048f7424d5f74aa", "sha256:36f86a017bfb27e23463240128ec890758bb15bb8fa0ad76f75d30c9ac44d42c", "sha256:d18a2678d5648d6c7774b20b8c86f08d76c5074f315c10c877eefe0f1247982b", "sha256:9840f917e01614d70376206908a0ab3fddfdcb1f92791760c61121c48fb34648", "sha256:80159a7213155e7b59b25a1c4e685cbba5013c961823e1c96bf0082f98965510" ] }, "Metadata": { "LastTagTime": "0001-01-01T00:00:00Z" } } ]

mmaiers-nmdp commented 4 years ago

@pbashyal-nmdp check to make sure that this is resolved and if so, close the ticket