HAS_ACCESSION has a scalar for release; should be a list/vector

nmdp-bioinformatics / gfe-db

Graph database representing IPD-IMGT/HLA sequence data as GFE

https://gfe-db.readthedocs.io

GNU General Public License v3.0

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Closed mmaiers-nmdp closed 7 months ago

mmaiers-nmdp commented 1 year ago

This can be demonstrated using this query and opening the GFE nodes.

MATCH (n:IPD_Allele) where n.name="HLA-A*01:01:01:02N" RETURN n LIMIT 25

the edges from IPD_Accession have the full array of releases the edges from IPD_Allele only have one

There are 3 issues:

[ ] the releases on IPD_Allele have "." characters
[ ] the releases on IPD_Allele are overwriting
[ ] the releases are allowing duplicates (could be fixed my making releases a set instead of a list

mmaiers-nmdp commented 1 year ago

They should both have the full array.

mmaiers-nmdp commented 7 months ago

This is fixed in the current database on dockerhub "chrisammon3000/gfe-db:latest" accessed 2024-02-12