Neo4j 5.9.0 upgrade - Githubissues

nmdp-bioinformatics / gfe-db

Graph database representing IPD-IMGT/HLA sequence data as GFE

https://gfe-db.readthedocs.io

GNU General Public License v3.0

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Neo4j 5.9.0 upgrade #97

Closed chrisammon3000 closed 9 months ago

chrisammon3000 commented 1 year ago

Description

Upgrades to Neo4j 5.9.0 using the Bitnami AMI.

AMI ID

To retrieve the AMI ID, sign into the AWS console and go to: https://aws.amazon.com/marketplace/server/configuration?productId=fa65fdf6-955a-45ac-8936-d382ef803043&ref_=aws-mp-console-configure-software-page

Select the latest release of Neo4j 5.9.0-1-r06.

New Usage

Check the consistency of the database.

STAGE=<stage> make database.check-consistency

After this command succeeds, reports can be downloaded.

STAGE=<stage> make get.reports

Next Steps

[ ] Disable cron jobs on db server during loading
[ ] Deduplicate release version numbers on edge arrays using set

chrisammon3000 commented 9 months ago

Closing because Neo4j 5.13 is available on a more recent pull request #101