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nmdp-bioinformatics / hml

Histoimmunogenetics Markup Language (HML).
GNU Lesser General Public License v3.0
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Add quality scores to consensus sequence #11

Closed ghost closed 9 years ago

ghost commented 9 years ago 
<consensus-sequence>
  <sequence alphabet="DNA">
GCTCTCACTCCATGAGGTATTTCTTCACATCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATC
GCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGGATGGA
GCCGCGGGCGCCGTGGATAGAGCAGGAGGGTCCGGAGTATTGGGACGGGGAGACACGGAAAGTGAAGG
CCCACTCACAGACTCACCGAGTGGACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCG
  </sequence>
  <quality-score index="0" value="123.45"/>
  <quality-score index="1" value="234.56"/>
  <quality-score index="2" value="345.67"/>
  <!- ... ->
</consensus-sequence>
ghost commented 9 years ago

todo: create a richer example with phred score and coverage