nmdp-bioinformatics / phycus

Service used for curation of Haplotype Frequency
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Add minimum value for haplotype frequency total #107

Closed kaeaton closed 5 years ago

kaeaton commented 5 years ago

I added a minimum total for haplotyping frequencies. The number is currently set at 0.95, but can easily be changed when we determine what the final cutoff point will be. A frequency total less than 1.0 but greater than or equal to 0.95 will give a warning but upload the data. Anything below 0.95 will trigger an error and will not be uploaded.

To test the compiled GUI, select the /client/testDataFiles folder from the GUI. (It will bulk upload all the .phycus files contained in it.) demo_OTH_test.phycus and US_CAU.phycus should upload correctly if you have added the populations OTH and US_CAU to the populations tab. Everything else should fail for a variety of reasons. Please contact me if you have any questions.