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nmdp-bioinformatics / pipeline

Consensus assembly and allele interpretation pipeline.
GNU Lesser General Public License v3.0
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Make a script to get sample data and build directory structure #12

Closed ckennedy-nmdp closed 9 years ago

ckennedy-nmdp commented 9 years ago

As discussed, nerfize the data accession a bit to get the single sample file in /opt/data/tutorial/fastq/, mkdir intermediate/ and final/ on a local machine for processing. Add documentation here: https://github.com/nmdp-bioinformatics/dash/wiki/Tutorial#run-the-pipeline.

janders3-nmdp commented 9 years ago

I updated the wiki, but we'll want to make the path to the pre-processed results clearer, since it's still referencing $HOME locations. The big change I made was to get people out of trying to write to /opt/data/tutorial -- since that's a read only directory on the AMI image.