splitter.bash checks for fastq files differently than it finds them.

nmdp-bioinformatics / pipeline

Consensus assembly and allele interpretation pipeline.

GNU Lesser General Public License v3.0

7 stars 7 forks source link

splitter.bash checks for fastq files differently than it finds them. #37

Closed janders3-nmdp closed 9 years ago

janders3-nmdp commented 9 years ago

That is, the initial check to see if there are fastq files, and if we should proceed, uses a simple ls command -- but later in the script, it uses a find command.

the find command is the right way to do it, and this code should use the find in both places.