Secondarily, the user may need to upgrade their JAVA JDK and Maven in order to build some of the dependencies from the source code.
There may be others I missed but I haven't gotten through the complete workflow yet.
It would be nice if the more nitty-gritty details of the dependencies were either integrated with existing documentation or provided in a separate document.
ghost
commented
9 years ago
In my attempt to execute the tutorial, I came across the following dependencies:
bcftools bwa nmdp ngs-tools (to obtain ngs-fastq-to-ssake) samtools ssake
Secondarily, the user may need to upgrade their JAVA JDK and Maven in order to build some of the dependencies from the source code.
There may be others I missed but I haven't gotten through the complete workflow yet.
It would be nice if the more nitty-gritty details of the dependencies were either integrated with existing documentation or provided in a separate document.