Clean up molecular entity

nmrML / nmrCV

Development of nmrCV terminology formerly included in the nmrML repository.

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Clean up molecular entity #20

Open NRayya opened 4 months ago

NRayya commented 4 months ago

Importing "molecular entity" from CHEBI resulted in importing many irrelevant classes:

elemental molecule
inorganic molecule
ion
isotopically modified compound
main group molecular entity
mancude ring
polyatomic entity
transition element molecular entity.

Those classes additionally result in heterogeneity of the class molecular entity as some of its children are strucutre based while the others are role based. Therefore, they should be removed.

NRayya commented 4 months ago

I have deprecated the abovementioned terms with the reason "out of scope" and without suggesting alternatives. d6b3c89065f753eaa43b4c17c2ab1707497e5d74

StroemPhi commented 3 months ago

To not get these classes from CHEBI we need to modify the import module to not pull them in instead of deprecating the terms in nmrCV.