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a Matlab / Octave toolbox for surface-based voxel neighborhood selection on the cerebral cortex, intended for informationg mapping of functional magnetic resonance imaging (fMRI) data
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Errors compiling on R2023a, w/ workaround #5

Open timvickery opened 1 year ago

timvickery commented 1 year ago

I received the below error when running surface_compile_mex.m on R2023a (Mac M-series proc). What worked for me was to add -DMX_COMPAT_32 flag to the mex call in question, in compile_mex.m in the toolbox_fast_marching subdirectory.

Error using mex /Users/tvickery/surfing/toolbox_fast_marching/mex/perform_front_propagation_3d_mex.cpp:87:12: error: no matching function for call to 'mxCreateNumericArray_730' plhs[0] = mxCreateNumericArray(3, dims, mxDOUBLE_CLASS, mxREAL ); ^~~~~~~~ /Applications/MATLAB_R2023a.app/extern/include/matrix.h:299:30: note: expanded from macro 'mxCreateNumericArray'

define mxCreateNumericArray mxCreateNumericArray_730

                         ^~~~~~~~~~~~~~~~~~~~~~~~

/Applications/MATLAB_R2023a.app/extern/include/matrix.h:969:1: note: candidate function not viable: no known conversion from 'int[3]' to 'const mwSize ' (aka 'const unsigned long ') for 2nd argument mxCreateNumericArray(mwSize ndim, const mwSize *dims, mxClassID classid, mxComplexity flag); ^ /Applications/MATLAB_R2023a.app/extern/include/matrix.h:299:30: note: expanded from macro 'mxCreateNumericArray'

define mxCreateNumericArray mxCreateNumericArray_730

                         ^

/Users/tvickery/surfing/toolbox_fast_marching/mex/perform_front_propagation_3d_mex.cpp:92:13: error: no matching function for call to 'mxCreateNumericArray_730' plhs[1] = mxCreateNumericArray(3, dims, mxDOUBLE_CLASS, mxREAL ); ^~~~~~~~ /Applications/MATLAB_R2023a.app/extern/include/matrix.h:299:30: note: expanded from macro 'mxCreateNumericArray'

define mxCreateNumericArray mxCreateNumericArray_730

                         ^~~~~~~~~~~~~~~~~~~~~~~~

/Applications/MATLAB_R2023a.app/extern/include/matrix.h:969:1: note: candidate function not viable: no known conversion from 'int[3]' to 'const mwSize ' (aka 'const unsigned long ') for 2nd argument mxCreateNumericArray(mwSize ndim, const mwSize *dims, mxClassID classid, mxComplexity flag); ^ /Applications/MATLAB_R2023a.app/extern/include/matrix.h:299:30: note: expanded from macro 'mxCreateNumericArray'

define mxCreateNumericArray mxCreateNumericArray_730

                         ^

/Users/tvickery/surfing/toolbox_fast_marching/mex/perform_front_propagation_3d_mex.cpp:102:13: error: no matching function for call to 'mxCreateNumericArray_730' plhs[2] = mxCreateNumericArray(3, dims, mxDOUBLE_CLASS, mxREAL ); ^~~~~~~~ /Applications/MATLAB_R2023a.app/extern/include/matrix.h:299:30: note: expanded from macro 'mxCreateNumericArray'

define mxCreateNumericArray mxCreateNumericArray_730

                         ^~~~~~~~~~~~~~~~~~~~~~~~

/Applications/MATLAB_R2023a.app/extern/include/matrix.h:969:1: note: candidate function not viable: no known conversion from 'int[3]' to 'const mwSize ' (aka 'const unsigned long ') for 2nd argument mxCreateNumericArray(mwSize ndim, const mwSize *dims, mxClassID classid, mxComplexity flag); ^ /Applications/MATLAB_R2023a.app/extern/include/matrix.h:299:30: note: expanded from macro 'mxCreateNumericArray'

define mxCreateNumericArray mxCreateNumericArray_730

                         ^

3 errors generated.

Error in compile_mex (line 3) mex mex/perform_front_propagation_3d.cpp mex/perform_front_propagation_3d_mex.cpp mex/fheap/fib.cpp

Error in surfing_compile_mex (line 27) eval(e)

nno commented 1 year ago

@timvickery thanks for opening the issue. I may have an alternative solution that (at least) works on Octave. (I don't have access to an Mac M series computer). Can you try the code in https://github.com/nno/surfing/pull/6 and see if that resolves the issue?