Onboarding Request: r4ss

[k-doering-NOAA]

Active Development

Yes

Tool name

r4ss

Tool abbreviation

r4ss

Author(s)

Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison, Andre E. Punt, R.I.C. Chris Francis, John R. Wallace, Chantel R. Wetzel, James T. Thorson, Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz, Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet, Sean C. Anderson, Gwladys I. Lambert, Megan M. Stachura, Andrew B. Cooper, Andi Stephens, Neil L. Klaer, Carey R. McGilliard, Iago Mosqueira, Watal M. Iwasaki, Kathryn L. Doering, Andrea M. Havron, Nathan R. Vaughan, LaTreese S. Denson, Ashleigh J. Novak, Henning Winker, Lee Qi, Megumi Oshima, Eric Fletcher

NOAA Internal

Yes

Maintainer Name

Ian Taylor

Maintainer Email

ian.taylor@noaa.gov

Background Text

The r4ss package is a collection of R functions for interacting with Stock Synthesis. It is based on the original work of Ian Stewart begun around 2005 and released as an open source R package in 2009. The package has a long list of authors and has benefited from a large community of users making suggestions and reporting issues.

Citation

https://doi.org/10.1016/j.fishres.2021.105924

References

No response

Associated Tools

SS3 https://vlab.noaa.gov/web/stock-synthesis

User Organizations

NOAA Northwest Fisheries Science Center, NOAA Southwest FIsheries Science Center, NOAA Southeast Fisheries Science Center, NOAA Pacific Islands Fisheries Science Center, NOAA Northeast Fisheries Science Center, ICES, ICCAT, CSIRO

Online App Link

No response

Executable Link

No response

Website Link

https://r4ss.github.io/r4ss/

Documentation Link

No response

Source Code Link

https://github.com/r4ss/r4ss

PDF Download Link

No response

Software Badges

https://img.shields.io/github/v/release/r4ss/r4ss?color=brightgreen&label=GitHub, https://github.com/r4ss/r4ss/actions/workflows/call-r-cmd-check.yml/badge.svg, https://codecov.io/gh/r4ss/r4ss/branch/main/graph/badge.svg

Toolbox Drawers

• [ ] Ecosystems
• [X] Fish and Fisheries
• [ ] Human Dimensions
• [ ] Protected Species
• [ ] General Modeling and Productivity Tools

Keywords

• [ ] ADMB
• [ ] Age Structured Model
• [ ] Bayesian Modeling
• [ ] Bycatch
• [ ] C++
• [ ] Calculator
• [ ] Data Exploration
• [ ] Data Limited Method
• [X] Data Visualization
• [ ] Decision Support Tool
• [ ] Developer Utilities
• [ ] Economics
• [ ] Ecosystem
• [ ] Ensemble Modeling
• [ ] Fish Biology
• [X] Fisheries
• [ ] Gradient Solver
• [ ] Guided User Interface
• [ ] Individual Based Model
• [ ] Legacy Tool
• [ ] Length Structured Model
• [ ] Management Strategy Evaluation
• [ ] Marine Mammals
• [ ] Maximum Likelihood Estimation
• [ ] Model Builder
• [ ] Model Comparision
• [ ] Multispecies Model
• [ ] Natural Mortality Model
• [ ] NOAA Branding
• [ ] North Pacific
• [X] Output Visualization
• [ ] Projection Modeling
• [X] R Package
• [ ] Reference Points Model
• [ ] Risk Assessment Tool
• [ ] Salmon
• [ ] Sampling Decision Tool
• [ ] Shiny
• [ ] Simulation
• [ ] Size Spectra Model
• [ ] Size Structured Model
• [ ] Socioeconomics
• [ ] Spatial Model
• [ ] Species Distribution Model
• [ ] Standardized Reporting
• [ ] Stock Assessment Model
• [ ] Stock Assessment Projections
• [ ] Stock Assessment Tool
• [ ] Surplus Production Model
• [ ] Tag Data Model
• [ ] Teaching Tool
• [ ] Time Series
• [ ] TMB
• [ ] User Utilities
• [ ] Virtual Population Analysis
• [ ] Visualization
• [ ] Web App

Uses Github Releases

Yes

Static version number

No response

Comments

Form needs more guidance on how to format certain items (e.g, if they should be coment or new line separated. Also, maybe author list should be long answer, because it is hard to edit with a long author string. For R packages, perhaps provide the tip of using packageDescription("r4ss") to get a formatted list of authors to start from .

Code of Conduct

• [X] I agree to follow the FIT's Code of Conduct

[github-actions[bot]]

Automatically generated JSON for the onboarding request:

{
  "active_development": true,
  "tool_name": "r4ss",
  "tool_abbreviation": "r4ss",
  "authors": " Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison, Andre E. Punt, R.I.C. Chris Francis, John R. Wallace, Chantel R. Wetzel, James T. Thorson, Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz, Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet, Sean C. Anderson, Gwladys I. Lambert, Megan M. Stachura, Andrew B. Cooper, Andi Stephens, Neil L. Klaer, Carey R. McGilliard, Iago Mosqueira, Watal M. Iwasaki, Kathryn L. Doering, Andrea M. Havron, Nathan R. Vaughan, LaTreese S. Denson, Ashleigh J. Novak, Henning Winker, Lee Qi, Megumi Oshima, Eric Fletcher",
  "noaa_internal": true,
  "maintainer_name": "Ian Taylor",
  "maintainer_email": "ian.taylor@noaa.gov",
  "background_text": "The r4ss package is a collection of R functions for interacting with Stock Synthesis. It is based on the original work of Ian Stewart begun around 2005 and released as an open source R package in 2009. The package has a long list of authors and has benefited from a large community of users making suggestions and reporting issues.",
  "citation": "https://doi.org/10.1016/j.fishres.2021.105924",
  "associated_tools": [
    {
      "name": ["SS3"],
      "link": ["https://vlab.noaa.gov/web/stock-synthesis"]
    }
  ],
  "user_organizations": ["NOAA Northwest Fisheries Science Center", "NOAA Southwest FIsheries Science Center", "NOAA Southeast Fisheries Science Center", "NOAA Pacific Islands Fisheries Science Center", "NOAA Northeast Fisheries Science Center", "ICES", "ICCAT", "CSIRO "],
  "website_link": "https://r4ss.github.io/r4ss/",
  "source_code_link": "https://github.com/r4ss/r4ss",
  "software_badges": ["https://img.shields.io/github/v/release/r4ss/r4ss?color=brightgreen&label=GitHub", "https://github.com/r4ss/r4ss/actions/workflows/call-r-cmd-check.yml/badge.svg", "https://codecov.io/gh/r4ss/r4ss/branch/main/graph/badge.svg"],
  "toolbox_drawers": ["Fish and Fisheries"],
  "keywords": ["Data Visualization", "Fisheries", "Output Visualization", "R Package"],
  "uses_github_releases": true
}

[github-actions[bot]]

Automatically generated JSON for the onboarding request:

{
  "active_development": true,
  "tool_name": "r4ss",
  "tool_abbreviation": "r4ss",
  "authors": " Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison, Andre E. Punt, R.I.C. Chris Francis, John R. Wallace, Chantel R. Wetzel, James T. Thorson, Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz, Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet, Sean C. Anderson, Gwladys I. Lambert, Megan M. Stachura, Andrew B. Cooper, Andi Stephens, Neil L. Klaer, Carey R. McGilliard, Iago Mosqueira, Watal M. Iwasaki, Kathryn L. Doering, Andrea M. Havron, Nathan R. Vaughan, LaTreese S. Denson, Ashleigh J. Novak, Henning Winker, Lee Qi, Megumi Oshima, Eric Fletcher",
  "noaa_internal": true,
  "maintainer_name": "Ian Taylor",
  "maintainer_email": "ian.taylor@noaa.gov",
  "background_text": "The r4ss package is a collection of R functions for interacting with Stock Synthesis. It is based on the original work of Ian Stewart begun around 2005 and released as an open source R package in 2009. The package has a long list of authors and has benefited from a large community of users making suggestions and reporting issues.",
  "citation": "https://doi.org/10.1016/j.fishres.2021.105924",
  "associated_tools": [
    {
      "name": ["SS3"],
      "link": ["https://vlab.noaa.gov/web/stock-synthesis"]
    }
  ],
  "user_organizations": ["NOAA Northwest Fisheries Science Center", "NOAA Southwest FIsheries Science Center", "NOAA Southeast Fisheries Science Center", "NOAA Pacific Islands Fisheries Science Center", "NOAA Northeast Fisheries Science Center", "ICES", "ICCAT", "CSIRO "],
  "website_link": "https://r4ss.github.io/r4ss/",
  "source_code_link": "https://github.com/r4ss/r4ss",
  "software_badges": ["https://img.shields.io/github/v/release/r4ss/r4ss?color=brightgreen&label=GitHub", "https://github.com/r4ss/r4ss/actions/workflows/call-r-cmd-check.yml/badge.svg", "https://codecov.io/gh/r4ss/r4ss/branch/main/graph/badge.svg"],
  "toolbox_drawers": ["Fish and Fisheries\r"],
  "keywords": ["Data Visualization\r", "Fisheries\r", "Output Visualization\r", "R Package\r"],
  "uses_github_releases": true
}

[github-actions[bot]]

Automatically generated JSON for the onboarding request:

{
  "active_development": true,
  "tool_name": "r4ss",
  "tool_abbreviation": "r4ss",
  "authors": " Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison, Andre E. Punt, R.I.C. Chris Francis, John R. Wallace, Chantel R. Wetzel, James T. Thorson, Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz, Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet, Sean C. Anderson, Gwladys I. Lambert, Megan M. Stachura, Andrew B. Cooper, Andi Stephens, Neil L. Klaer, Carey R. McGilliard, Iago Mosqueira, Watal M. Iwasaki, Kathryn L. Doering, Andrea M. Havron, Nathan R. Vaughan, LaTreese S. Denson, Ashleigh J. Novak, Henning Winker, Lee Qi, Megumi Oshima, Eric Fletcher",
  "noaa_internal": true,
  "maintainer_name": "Ian Taylor",
  "maintainer_email": "ian.taylor@noaa.gov",
  "background_text": "The r4ss package is a collection of R functions for interacting with Stock Synthesis. It is based on the original work of Ian Stewart begun around 2005 and released as an open source R package in 2009. The package has a long list of authors and has benefited from a large community of users making suggestions and reporting issues.",
  "citation": "https://doi.org/10.1016/j.fishres.2021.105924",
  "associated_tools": [
    {
      "name": ["SS3"],
      "link": ["https://vlab.noaa.gov/web/stock-synthesis"]
    }
  ],
  "user_organizations": ["NOAA Northwest Fisheries Science Center", "NOAA Southwest FIsheries Science Center", "NOAA Southeast Fisheries Science Center", "NOAA Pacific Islands Fisheries Science Center", "NOAA Northeast Fisheries Science Center", "ICES", "ICCAT", "CSIRO "],
  "website_link": "https://r4ss.github.io/r4ss/",
  "source_code_link": "https://github.com/r4ss/r4ss",
  "software_badges": ["https://img.shields.io/github/v/release/r4ss/r4ss?color=brightgreen&label=GitHub", "https://github.com/r4ss/r4ss/actions/workflows/call-r-cmd-check.yml/badge.svg", "https://codecov.io/gh/r4ss/r4ss/branch/main/graph/badge.svg"],
  "toolbox_drawers": ["Fish and Fisheries\r"],
  "keywords": ["Data Visualization\r", "Fisheries\r", "Output Visualization\r", "R Package\r"],
  "uses_github_releases": true
}

[github-actions[bot]]

Automatically generated JSON for the onboarding request:

{
  "active_development": true,
  "tool_name": "r4ss",
  "tool_abbreviation": "r4ss",
  "authors": " Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison, Andre E. Punt, R.I.C. Chris Francis, John R. Wallace, Chantel R. Wetzel, James T. Thorson, Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz, Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet, Sean C. Anderson, Gwladys I. Lambert, Megan M. Stachura, Andrew B. Cooper, Andi Stephens, Neil L. Klaer, Carey R. McGilliard, Iago Mosqueira, Watal M. Iwasaki, Kathryn L. Doering, Andrea M. Havron, Nathan R. Vaughan, LaTreese S. Denson, Ashleigh J. Novak, Henning Winker, Lee Qi, Megumi Oshima, Eric Fletcher",
  "noaa_internal": true,
  "maintainer_name": "Ian Taylor",
  "maintainer_email": "ian.taylor@noaa.gov",
  "background_text": "The r4ss package is a collection of R functions for interacting with Stock Synthesis. It is based on the original work of Ian Stewart begun around 2005 and released as an open source R package in 2009. The package has a long list of authors and has benefited from a large community of users making suggestions and reporting issues.",
  "citation": "https://doi.org/10.1016/j.fishres.2021.105924",
  "associated_tools": [
    {
      "name": ["SS3"],
      "link": ["https://vlab.noaa.gov/web/stock-synthesis"]
    }
  ],
  "user_organizations": ["NOAA Northwest Fisheries Science Center", "NOAA Southwest FIsheries Science Center", "NOAA Southeast Fisheries Science Center", "NOAA Pacific Islands Fisheries Science Center", "NOAA Northeast Fisheries Science Center", "ICES", "ICCAT", "CSIRO "],
  "website_link": "https://r4ss.github.io/r4ss/",
  "source_code_link": "https://github.com/r4ss/r4ss",
  "software_badges": ["https://img.shields.io/github/v/release/r4ss/r4ss?color=brightgreen&label=GitHub", "https://github.com/r4ss/r4ss/actions/workflows/call-r-cmd-check.yml/badge.svg", "https://codecov.io/gh/r4ss/r4ss/branch/main/graph/badge.svg"],
  "toolbox_drawers": ["Fish and Fisheries\r"],
  "keywords": ["Data Visualization\r", "Fisheries\r", "Output Visualization\r", "R Package\r"],
  "uses_github_releases": true
}

[github-actions[bot]]

Automatically generated JSON for the onboarding request:

{
  "active_development": true,
  "tool_name": "r4ss",
  "tool_abbreviation": "r4ss",
  "authors": " Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison, Andre E. Punt, R.I.C. Chris Francis, John R. Wallace, Chantel R. Wetzel, James T. Thorson, Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz, Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet, Sean C. Anderson, Gwladys I. Lambert, Megan M. Stachura, Andrew B. Cooper, Andi Stephens, Neil L. Klaer, Carey R. McGilliard, Iago Mosqueira, Watal M. Iwasaki, Kathryn L. Doering, Andrea M. Havron, Nathan R. Vaughan, LaTreese S. Denson, Ashleigh J. Novak, Henning Winker, Lee Qi, Megumi Oshima, Eric Fletcher",
  "noaa_internal": true,
  "maintainer_name": "Ian Taylor",
  "maintainer_email": "ian.taylor@noaa.gov",
  "background_text": "The r4ss package is a collection of R functions for interacting with Stock Synthesis. It is based on the original work of Ian Stewart begun around 2005 and released as an open source R package in 2009. The package has a long list of authors and has benefited from a large community of users making suggestions and reporting issues.",
  "citation": "https://doi.org/10.1016/j.fishres.2021.105924",
  "associated_tools": [
    {
      "name": ["SS3"],
      "link": ["https://vlab.noaa.gov/web/stock-synthesis"]
    }
  ],
  "user_organizations": ["NOAA Northwest Fisheries Science Center", "NOAA Southwest FIsheries Science Center", "NOAA Southeast Fisheries Science Center", "NOAA Pacific Islands Fisheries Science Center", "NOAA Northeast Fisheries Science Center", "ICES", "ICCAT", "CSIRO "],
  "website_link": "https://r4ss.github.io/r4ss/",
  "source_code_link": "https://github.com/r4ss/r4ss",
  "software_badges": ["https://img.shields.io/github/v/release/r4ss/r4ss?color=brightgreen&label=GitHub", "https://github.com/r4ss/r4ss/actions/workflows/call-r-cmd-check.yml/badge.svg", "https://codecov.io/gh/r4ss/r4ss/branch/main/graph/badge.svg"],
  "toolbox_drawers": ["Fish and Fisheries\r"],
  "keywords": ["Data Visualization\r", "Fisheries\r", "Output Visualization\r", "R Package\r"],
  "uses_github_releases": true
}

[github-actions[bot]]

Automatically generated JSON for the onboarding request:

{
  "active_development": true,
  "tool_name": "r4ss",
  "tool_abbreviation": "r4ss",
  "authors": " Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison, Andre E. Punt, R.I.C. Chris Francis, John R. Wallace, Chantel R. Wetzel, James T. Thorson, Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz, Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet, Sean C. Anderson, Gwladys I. Lambert, Megan M. Stachura, Andrew B. Cooper, Andi Stephens, Neil L. Klaer, Carey R. McGilliard, Iago Mosqueira, Watal M. Iwasaki, Kathryn L. Doering, Andrea M. Havron, Nathan R. Vaughan, LaTreese S. Denson, Ashleigh J. Novak, Henning Winker, Lee Qi, Megumi Oshima, Eric Fletcher",
  "noaa_internal": true,
  "maintainer_name": "Ian Taylor",
  "maintainer_email": "ian.taylor@noaa.gov",
  "background_text": "The r4ss package is a collection of R functions for interacting with Stock Synthesis. It is based on the original work of Ian Stewart begun around 2005 and released as an open source R package in 2009. The package has a long list of authors and has benefited from a large community of users making suggestions and reporting issues.",
  "citation": "https://doi.org/10.1016/j.fishres.2021.105924",
  "associated_tools": [
    {
      "name": ["SS3"],
      "link": ["https://vlab.noaa.gov/web/stock-synthesis"]
    }
  ],
  "user_organizations": ["NOAA Northwest Fisheries Science Center", "NOAA Southwest FIsheries Science Center", "NOAA Southeast Fisheries Science Center", "NOAA Pacific Islands Fisheries Science Center", "NOAA Northeast Fisheries Science Center", "ICES", "ICCAT", "CSIRO "],
  "website_link": "https://r4ss.github.io/r4ss/",
  "source_code_link": "https://github.com/r4ss/r4ss",
  "software_badges": ["https://img.shields.io/github/v/release/r4ss/r4ss?color=brightgreen&label=GitHub", "https://github.com/r4ss/r4ss/actions/workflows/call-r-cmd-check.yml/badge.svg", "https://codecov.io/gh/r4ss/r4ss/branch/main/graph/badge.svg"],
  "toolbox_drawers": ["Fish and Fisheries\r"],
  "keywords": ["Data Visualization\r", "Fisheries\r", "Output Visualization\r", "R Package\r"],
  "uses_github_releases": true
}

[github-actions[bot]]

Automatically generated JSON for the onboarding request:

{
  "active_development": true,
  "tool_name": "r4ss",
  "tool_abbreviation": "r4ss",
  "authors": " Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison, Andre E. Punt, R.I.C. Chris Francis, John R. Wallace, Chantel R. Wetzel, James T. Thorson, Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz, Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet, Sean C. Anderson, Gwladys I. Lambert, Megan M. Stachura, Andrew B. Cooper, Andi Stephens, Neil L. Klaer, Carey R. McGilliard, Iago Mosqueira, Watal M. Iwasaki, Kathryn L. Doering, Andrea M. Havron, Nathan R. Vaughan, LaTreese S. Denson, Ashleigh J. Novak, Henning Winker, Lee Qi, Megumi Oshima, Eric Fletcher",
  "noaa_internal": true,
  "maintainer_name": "Ian Taylor",
  "maintainer_email": "ian.taylor@noaa.gov",
  "background_text": "The r4ss package is a collection of R functions for interacting with Stock Synthesis. It is based on the original work of Ian Stewart begun around 2005 and released as an open source R package in 2009. The package has a long list of authors and has benefited from a large community of users making suggestions and reporting issues.",
  "citation": "https://doi.org/10.1016/j.fishres.2021.105924",
  "associated_tools": [
    {
      "name": ["SS3"],
      "link": ["https://vlab.noaa.gov/web/stock-synthesis"]
    }
  ],
  "user_organizations": ["NOAA Northwest Fisheries Science Center", "NOAA Southwest FIsheries Science Center", "NOAA Southeast Fisheries Science Center", "NOAA Pacific Islands Fisheries Science Center", "NOAA Northeast Fisheries Science Center", "ICES", "ICCAT", "CSIRO "],
  "website_link": "https://r4ss.github.io/r4ss/",
  "source_code_link": "https://github.com/r4ss/r4ss",
  "software_badges": ["https://img.shields.io/github/v/release/r4ss/r4ss?color=brightgreen&label=GitHub", "https://github.com/r4ss/r4ss/actions/workflows/call-r-cmd-check.yml/badge.svg", "https://codecov.io/gh/r4ss/r4ss/branch/main/graph/badge.svg"],
  "toolbox_drawers": ["Fish and Fisheries\r"],
  "keywords": ["Data Visualization\r", "Fisheries\r", "Output Visualization\r", "R Package\r"],
  "uses_github_releases": true
}

[github-actions[bot]]

Automatically generated JSON for the onboarding request:

{
  "active_development": true,
  "tool_name": "r4ss",
  "tool_abbreviation": "r4ss",
  "authors": " Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison, Andre E. Punt, R.I.C. Chris Francis, John R. Wallace, Chantel R. Wetzel, James T. Thorson, Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz, Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet, Sean C. Anderson, Gwladys I. Lambert, Megan M. Stachura, Andrew B. Cooper, Andi Stephens, Neil L. Klaer, Carey R. McGilliard, Iago Mosqueira, Watal M. Iwasaki, Kathryn L. Doering, Andrea M. Havron, Nathan R. Vaughan, LaTreese S. Denson, Ashleigh J. Novak, Henning Winker, Lee Qi, Megumi Oshima, Eric Fletcher",
  "noaa_internal": true,
  "maintainer_name": "Ian Taylor",
  "maintainer_email": "ian.taylor@noaa.gov",
  "background_text": "The r4ss package is a collection of R functions for interacting with Stock Synthesis. It is based on the original work of Ian Stewart begun around 2005 and released as an open source R package in 2009. The package has a long list of authors and has benefited from a large community of users making suggestions and reporting issues.",
  "citation": "https://doi.org/10.1016/j.fishres.2021.105924",
  "associated_tools": [
    {
      "name": ["SS3"],
      "link": ["https://vlab.noaa.gov/web/stock-synthesis"]
    }
  ],
  "user_organizations": ["NOAA Northwest Fisheries Science Center", "NOAA Southwest FIsheries Science Center", "NOAA Southeast Fisheries Science Center", "NOAA Pacific Islands Fisheries Science Center", "NOAA Northeast Fisheries Science Center", "ICES", "ICCAT", "CSIRO "],
  "website_link": "https://r4ss.github.io/r4ss/",
  "source_code_link": "https://github.com/r4ss/r4ss",
  "software_badges": ["https://img.shields.io/github/v/release/r4ss/r4ss?color=brightgreen&label=GitHub", "https://github.com/r4ss/r4ss/actions/workflows/call-r-cmd-check.yml/badge.svg", "https://codecov.io/gh/r4ss/r4ss/branch/main/graph/badge.svg"],
  "toolbox_drawers": ["Fish and Fisheries\r"],
  "keywords": ["Data Visualization\r", "Fisheries\r", "Output Visualization\r", "R Package\r"],
  "uses_github_releases": true
}

[github-actions[bot]]

Automatically generated JSON for the onboarding request:

{
  "active_development": true,
  "tool_name": "r4ss",
  "tool_abbreviation": "r4ss",
  "authors": " Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison, Andre E. Punt, R.I.C. Chris Francis, John R. Wallace, Chantel R. Wetzel, James T. Thorson, Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz, Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet, Sean C. Anderson, Gwladys I. Lambert, Megan M. Stachura, Andrew B. Cooper, Andi Stephens, Neil L. Klaer, Carey R. McGilliard, Iago Mosqueira, Watal M. Iwasaki, Kathryn L. Doering, Andrea M. Havron, Nathan R. Vaughan, LaTreese S. Denson, Ashleigh J. Novak, Henning Winker, Lee Qi, Megumi Oshima, Eric Fletcher",
  "noaa_internal": true,
  "maintainer_name": "Ian Taylor",
  "maintainer_email": "ian.taylor@noaa.gov",
  "background_text": "The r4ss package is a collection of R functions for interacting with Stock Synthesis. It is based on the original work of Ian Stewart begun around 2005 and released as an open source R package in 2009. The package has a long list of authors and has benefited from a large community of users making suggestions and reporting issues.",
  "citation": "https://doi.org/10.1016/j.fishres.2021.105924",
  "associated_tools": [
    {
      "name": ["SS3"],
      "link": ["https://vlab.noaa.gov/web/stock-synthesis"]
    }
  ],
  "user_organizations": ["NOAA Northwest Fisheries Science Center", "NOAA Southwest FIsheries Science Center", "NOAA Southeast Fisheries Science Center", "NOAA Pacific Islands Fisheries Science Center", "NOAA Northeast Fisheries Science Center", "ICES", "ICCAT", "CSIRO "],
  "website_link": "https://r4ss.github.io/r4ss/",
  "source_code_link": "https://github.com/r4ss/r4ss",
  "software_badges": ["https://img.shields.io/github/v/release/r4ss/r4ss?color=brightgreen&label=GitHub", "https://github.com/r4ss/r4ss/actions/workflows/call-r-cmd-check.yml/badge.svg", "https://codecov.io/gh/r4ss/r4ss/branch/main/graph/badge.svg"],
  "toolbox_drawers": ["Fish and Fisheries\r"],
  "keywords": ["Data Visualization\r", "Fisheries\r", "Output Visualization\r", "R Package\r"],
  "uses_github_releases": true
}

[github-actions[bot]]

Automatically generated JSON for the onboarding request:

{
  "active_development": true,
  "tool_name": "r4ss",
  "tool_abbreviation": "r4ss",
  "authors": " Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison, Andre E. Punt, R.I.C. Chris Francis, John R. Wallace, Chantel R. Wetzel, James T. Thorson, Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz, Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet, Sean C. Anderson, Gwladys I. Lambert, Megan M. Stachura, Andrew B. Cooper, Andi Stephens, Neil L. Klaer, Carey R. McGilliard, Iago Mosqueira, Watal M. Iwasaki, Kathryn L. Doering, Andrea M. Havron, Nathan R. Vaughan, LaTreese S. Denson, Ashleigh J. Novak, Henning Winker, Lee Qi, Megumi Oshima, Eric Fletcher",
  "noaa_internal": true,
  "maintainer_name": "Ian Taylor",
  "maintainer_email": "ian.taylor@noaa.gov",
  "background_text": "The r4ss package is a collection of R functions for interacting with Stock Synthesis. It is based on the original work of Ian Stewart begun around 2005 and released as an open source R package in 2009. The package has a long list of authors and has benefited from a large community of users making suggestions and reporting issues.",
  "citation": "https://doi.org/10.1016/j.fishres.2021.105924",
  "associated_tools": [
    {
      "name": ["SS3"],
      "link": ["https://vlab.noaa.gov/web/stock-synthesis"]
    }
  ],
  "user_organizations": ["NOAA Northwest Fisheries Science Center", "NOAA Southwest FIsheries Science Center", "NOAA Southeast Fisheries Science Center", "NOAA Pacific Islands Fisheries Science Center", "NOAA Northeast Fisheries Science Center", "ICES", "ICCAT", "CSIRO "],
  "website_link": "https://r4ss.github.io/r4ss/",
  "source_code_link": "https://github.com/r4ss/r4ss",
  "software_badges": ["https://img.shields.io/github/v/release/r4ss/r4ss?color=brightgreen&label=GitHub", "https://github.com/r4ss/r4ss/actions/workflows/call-r-cmd-check.yml/badge.svg", "https://codecov.io/gh/r4ss/r4ss/branch/main/graph/badge.svg"],
  "toolbox_drawers": ["Fish and Fisheries\r"],
  "keywords": ["Data Visualization\r", "Fisheries\r", "Output Visualization\r", "R Package\r"],
  "uses_github_releases": true
}

[github-actions[bot]]

Automatically generated JSON for the onboarding request:

{
  "active_development": true,
  "tool_name": "r4ss",
  "tool_abbreviation": "r4ss",
  "authors": " Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison, Andre E. Punt, R.I.C. Chris Francis, John R. Wallace, Chantel R. Wetzel, James T. Thorson, Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz, Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet, Sean C. Anderson, Gwladys I. Lambert, Megan M. Stachura, Andrew B. Cooper, Andi Stephens, Neil L. Klaer, Carey R. McGilliard, Iago Mosqueira, Watal M. Iwasaki, Kathryn L. Doering, Andrea M. Havron, Nathan R. Vaughan, LaTreese S. Denson, Ashleigh J. Novak, Henning Winker, Lee Qi, Megumi Oshima, Eric Fletcher",
  "noaa_internal": true,
  "maintainer_name": "Ian Taylor",
  "maintainer_email": "ian.taylor@noaa.gov",
  "background_text": "The r4ss package is a collection of R functions for interacting with Stock Synthesis. It is based on the original work of Ian Stewart begun around 2005 and released as an open source R package in 2009. The package has a long list of authors and has benefited from a large community of users making suggestions and reporting issues.",
  "citation": "https://doi.org/10.1016/j.fishres.2021.105924",
  "associated_tools": [
    {
      "name": ["SS3"],
      "link": ["https://vlab.noaa.gov/web/stock-synthesis"]
    }
  ],
  "user_organizations": ["NOAA Northwest Fisheries Science Center", "NOAA Southwest FIsheries Science Center", "NOAA Southeast Fisheries Science Center", "NOAA Pacific Islands Fisheries Science Center", "NOAA Northeast Fisheries Science Center", "ICES", "ICCAT", "CSIRO "],
  "website_link": "https://r4ss.github.io/r4ss/",
  "source_code_link": "https://github.com/r4ss/r4ss",
  "software_badges": ["https://img.shields.io/github/v/release/r4ss/r4ss?color=brightgreen&label=GitHub", "https://github.com/r4ss/r4ss/actions/workflows/call-r-cmd-check.yml/badge.svg", "https://codecov.io/gh/r4ss/r4ss/branch/main/graph/badge.svg"],
  "toolbox_drawers": ["Fish and Fisheries\r"],
  "keywords": ["Data Visualization\r", "Fisheries\r", "Output Visualization\r", "R Package\r"],
  "uses_github_releases": true
}

[github-actions[bot]]

Automatically generated JSON for the onboarding request:

{
  "active_development": true,
  "tool_name": "r4ss",
  "tool_abbreviation": "r4ss",
  "authors": " Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison, Andre E. Punt, R.I.C. Chris Francis, John R. Wallace, Chantel R. Wetzel, James T. Thorson, Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz, Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet, Sean C. Anderson, Gwladys I. Lambert, Megan M. Stachura, Andrew B. Cooper, Andi Stephens, Neil L. Klaer, Carey R. McGilliard, Iago Mosqueira, Watal M. Iwasaki, Kathryn L. Doering, Andrea M. Havron, Nathan R. Vaughan, LaTreese S. Denson, Ashleigh J. Novak, Henning Winker, Lee Qi, Megumi Oshima, Eric Fletcher",
  "noaa_internal": true,
  "maintainer_name": "Ian Taylor",
  "maintainer_email": "ian.taylor@noaa.gov",
  "background_text": "The r4ss package is a collection of R functions for interacting with Stock Synthesis. It is based on the original work of Ian Stewart begun around 2005 and released as an open source R package in 2009. The package has a long list of authors and has benefited from a large community of users making suggestions and reporting issues.",
  "citation": "https://doi.org/10.1016/j.fishres.2021.105924",
  "associated_tools": [
    {
      "name": ["SS3"],
      "link": ["https://vlab.noaa.gov/web/stock-synthesis"]
    }
  ],
  "user_organizations": ["NOAA Northwest Fisheries Science Center", "NOAA Southwest FIsheries Science Center", "NOAA Southeast Fisheries Science Center", "NOAA Pacific Islands Fisheries Science Center", "NOAA Northeast Fisheries Science Center", "ICES", "ICCAT", "CSIRO "],
  "website_link": "https://r4ss.github.io/r4ss/",
  "source_code_link": "https://github.com/r4ss/r4ss",
  "software_badges": ["https://img.shields.io/github/v/release/r4ss/r4ss?color=brightgreen&label=GitHub", "https://github.com/r4ss/r4ss/actions/workflows/call-r-cmd-check.yml/badge.svg", "https://codecov.io/gh/r4ss/r4ss/branch/main/graph/badge.svg"],
  "toolbox_drawers": ["Fish and Fisheries"],
  "keywords": ["Data Visualization", "Fisheries", "Output Visualization", "R Package"],
  "uses_github_releases": true
}

[github-actions[bot]]

Automatically generated JSON for the onboarding request:

{
  "active_development": true,
  "tool_name": "r4ss",
  "tool_abbreviation": "r4ss",
  "authors": " Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison, Andre E. Punt, R.I.C. Chris Francis, John R. Wallace, Chantel R. Wetzel, James T. Thorson, Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz, Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet, Sean C. Anderson, Gwladys I. Lambert, Megan M. Stachura, Andrew B. Cooper, Andi Stephens, Neil L. Klaer, Carey R. McGilliard, Iago Mosqueira, Watal M. Iwasaki, Kathryn L. Doering, Andrea M. Havron, Nathan R. Vaughan, LaTreese S. Denson, Ashleigh J. Novak, Henning Winker, Lee Qi, Megumi Oshima, Eric Fletcher",
  "noaa_internal": true,
  "maintainer_name": "Ian Taylor",
  "maintainer_email": "ian.taylor@noaa.gov",
  "background_text": "The r4ss package is a collection of R functions for interacting with Stock Synthesis. It is based on the original work of Ian Stewart begun around 2005 and released as an open source R package in 2009. The package has a long list of authors and has benefited from a large community of users making suggestions and reporting issues.",
  "citation": "https://doi.org/10.1016/j.fishres.2021.105924",
  "associated_tools": [
    {
      "name": ["SS3"],
      "link": ["https://vlab.noaa.gov/web/stock-synthesis"]
    }
  ],
  "user_organizations": ["NOAA Northwest Fisheries Science Center", "NOAA Southwest FIsheries Science Center", "NOAA Southeast Fisheries Science Center", "NOAA Pacific Islands Fisheries Science Center", "NOAA Northeast Fisheries Science Center", "ICES", "ICCAT", "CSIRO "],
  "website_link": "https://r4ss.github.io/r4ss/",
  "source_code_link": "https://github.com/r4ss/r4ss",
  "software_badges": ["https://img.shields.io/github/v/release/r4ss/r4ss?color=brightgreen&label=GitHub", "https://github.com/r4ss/r4ss/actions/workflows/call-r-cmd-check.yml/badge.svg", "https://codecov.io/gh/r4ss/r4ss/branch/main/graph/badge.svg"],
  "toolbox_drawers": ["Fish and Fisheries"],
  "keywords": ["Data Visualization", "Fisheries", "Output Visualization", "R Package"],
  "uses_github_releases": true
}

[github-actions[bot]]

Automatically generated JSON for the onboarding request:

{
  "active_development": true,
  "tool_name": "r4ss",
  "tool_abbreviation": "r4ss",
  "authors": " Ian G. Taylor, Ian J. Stewart, Allan C. Hicks, Tommy M. Garrison, Andre E. Punt, R.I.C. Chris Francis, John R. Wallace, Chantel R. Wetzel, James T. Thorson, Yukio Takeuchi, Kotaro Ono, Cole C. Monnahan, Christine C. Stawitz, Z. Teresa A'mar, Athol R. Whitten, Kelli F. Johnson, Robbie L. Emmet, Sean C. Anderson, Gwladys I. Lambert, Megan M. Stachura, Andrew B. Cooper, Andi Stephens, Neil L. Klaer, Carey R. McGilliard, Iago Mosqueira, Watal M. Iwasaki, Kathryn L. Doering, Andrea M. Havron, Nathan R. Vaughan, LaTreese S. Denson, Ashleigh J. Novak, Henning Winker, Lee Qi, Megumi Oshima, Eric Fletcher",
  "noaa_internal": true,
  "maintainer_name": "Ian Taylor",
  "maintainer_email": "ian.taylor@noaa.gov",
  "background_text": "The r4ss package is a collection of R functions for interacting with Stock Synthesis. It is based on the original work of Ian Stewart begun around 2005 and released as an open source R package in 2009. The package has a long list of authors and has benefited from a large community of users making suggestions and reporting issues.",
  "citation": "https://doi.org/10.1016/j.fishres.2021.105924",
  "associated_tools": [
    {
      "name": "SS3",
      "link": "https://vlab.noaa.gov/web/stock-synthesis"
    }
  ],
  "user_organizations": ["NOAA Northwest Fisheries Science Center", "NOAA Southwest FIsheries Science Center", "NOAA Southeast Fisheries Science Center", "NOAA Pacific Islands Fisheries Science Center", "NOAA Northeast Fisheries Science Center", "ICES", "ICCAT", "CSIRO "],
  "website_link": "https://r4ss.github.io/r4ss/",
  "source_code_link": "https://github.com/r4ss/r4ss",
  "software_badges": ["https://img.shields.io/github/v/release/r4ss/r4ss?color=brightgreen&label=GitHub", "https://github.com/r4ss/r4ss/actions/workflows/call-r-cmd-check.yml/badge.svg", "https://codecov.io/gh/r4ss/r4ss/branch/main/graph/badge.svg"],
  "toolbox_drawers": ["Fish and Fisheries"],
  "keywords": ["Data Visualization", "Fisheries", "Output Visualization", "R Package"],
  "uses_github_releases": true
}

[k-doering-NOAA]

successfully onboarded