rocky: add MARINe Pisaster data

[bbest]

Would be great if you could work on making the time series plots for Pisaster (PISOCH in the seastarkat count data).

Here is a plot that I made in excel using this dataset for the OCNMS meeting as reference:

Also interested in KATTUN Black Katy Chitons (Katharina tunicata)

[bbest]

sscount

Processing MARINe_sscount_32ad_18f5_c37e.csv.

Species

What are these other species?

Only know PISOCH Ochre Seastar (Pisaster ochraceus)

sscount_spp.csv:

species_code	target_assemblage	n_rows
ASTSER	sea_star	165
DERIMB	sea_star	198
EVATRO	sea_star	156
HENSPP	sea_star	387
KATTUN	sea_star	679
LEPTAS	sea_star	430
ORTKOE	sea_star	3
PATMIN	sea_star	674
PISBRE	sea_star	130
PISGIG	sea_star	653
PISOCH	sea_star	2415
PYCHEL	sea_star	347
STRFRA	sea_star	149
STRPUR	sea_star	151
UNIDEN	sea_star	2

Here are species lists:

• longtermprotocol.pdf
  • Table 4. Standardized Names for Target Species Plots
• biodiversityprotocol.pdf
• biodiversity-species-list.pdf

method_code

Do we use all the methods? So far assuming yes.

sscount_spp_methods.csv, filter(species_code = "PISOCH"):

species_code	method_code	n_rows
PISOCH	BT	55
PISOCH	BT25	158
PISOCH	GSES	552
PISOCH	IP	1306
PISOCH	TS30	344

[bbest]

Here are the updates by sanctuary to Rocky Shore > Ochre stars:

• CINMS - island avg
• MBNMS - many sites
• OCNMS