Traceback (most recent call last):
File "/home/htakemur/anaconda3/lib/python3.7/runpy.py", line 193, in _run_module_as_main
"main", mod_spec)
File "/home/htakemur/anaconda3/lib/python3.7/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/home/htakemur/anaconda3/lib/python3.7/site-packages/neuropythy/main.py", line 19, in
sys.exit(main(sys.argv[1:]))
File "/home/htakemur/anaconda3/lib/python3.7/site-packages/neuropythy/main.py", line 16, in main
return commandsargv[0]
File "/home/htakemur/anaconda3/lib/python3.7/site-packages/neuropythy/commands/benson14_retinotopy.py", line 155, in main
sub = subject(subnm)
File "/home/htakemur/anaconda3/lib/python3.7/site-packages/neuropythy/freesurfer/core.py", line 738, in subject
sub = subject_from_filemap(fmap, name=name, check_path=check_path, meta_data=meta_data)
File "/home/htakemur/anaconda3/lib/python3.7/site-packages/neuropythy/freesurfer/core.py", line 658, in subject_from_filemap
raise ValueError('given path does not appear to hold a freesurfer subject')
ValueError: given path does not appear to hold a freesurfer subject
Hello @noahbenson
I am now getting a following error when I run Benson Retinotopy atlas using neuropathy... Do you have any thought on this error?
Command: python -m neuropythy benson14_retinotopy SUBJID --vol-format=nifti
Traceback (most recent call last): File "/home/htakemur/anaconda3/lib/python3.7/runpy.py", line 193, in _run_module_as_main "main", mod_spec) File "/home/htakemur/anaconda3/lib/python3.7/runpy.py", line 85, in _run_code exec(code, run_globals) File "/home/htakemur/anaconda3/lib/python3.7/site-packages/neuropythy/main.py", line 19, in
sys.exit(main(sys.argv[1:]))
File "/home/htakemur/anaconda3/lib/python3.7/site-packages/neuropythy/main.py", line 16, in main
return commandsargv[0]
File "/home/htakemur/anaconda3/lib/python3.7/site-packages/neuropythy/commands/benson14_retinotopy.py", line 155, in main
sub = subject(subnm)
File "/home/htakemur/anaconda3/lib/python3.7/site-packages/neuropythy/freesurfer/core.py", line 738, in subject
sub = subject_from_filemap(fmap, name=name, check_path=check_path, meta_data=meta_data)
File "/home/htakemur/anaconda3/lib/python3.7/site-packages/neuropythy/freesurfer/core.py", line 658, in subject_from_filemap
raise ValueError('given path does not appear to hold a freesurfer subject')
ValueError: given path does not appear to hold a freesurfer subject