noahbenson / neuropythy

A neuroscience library for Python, intended to complement the existing nibabel library.
GNU Affero General Public License v3.0
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Errors for running Benson Retinotopy atlas #21

Closed htakemur closed 3 years ago

htakemur commented 3 years ago

Hello @noahbenson

I am now getting a following error when I run Benson Retinotopy atlas using neuropathy... Do you have any thought on this error?

Command: python -m neuropythy benson14_retinotopy SUBJID --vol-format=nifti

Traceback (most recent call last): File "/home/htakemur/anaconda3/lib/python3.7/runpy.py", line 193, in _run_module_as_main "main", mod_spec) File "/home/htakemur/anaconda3/lib/python3.7/runpy.py", line 85, in _run_code exec(code, run_globals) File "/home/htakemur/anaconda3/lib/python3.7/site-packages/neuropythy/main.py", line 19, in sys.exit(main(sys.argv[1:])) File "/home/htakemur/anaconda3/lib/python3.7/site-packages/neuropythy/main.py", line 16, in main return commandsargv[0] File "/home/htakemur/anaconda3/lib/python3.7/site-packages/neuropythy/commands/benson14_retinotopy.py", line 155, in main sub = subject(subnm) File "/home/htakemur/anaconda3/lib/python3.7/site-packages/neuropythy/freesurfer/core.py", line 738, in subject sub = subject_from_filemap(fmap, name=name, check_path=check_path, meta_data=meta_data) File "/home/htakemur/anaconda3/lib/python3.7/site-packages/neuropythy/freesurfer/core.py", line 658, in subject_from_filemap raise ValueError('given path does not appear to hold a freesurfer subject') ValueError: given path does not appear to hold a freesurfer subject

htakemur commented 3 years ago

I will close it once, since this looks like due to type error of subject's name. I obtained different error, but will open different thread.