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IMPRES scores for MGH samples #3

Open DanteBortone opened 5 years ago

DanteBortone commented 5 years ago

Hi,

Are the IMPRES scores for the MGH samples (Ruppen et.al 2018) available anywhere? Supplementary table 9 (41591_2018_157_MOESM6_ESM.xlsx) has a the IMPRES scores for all datasets except this one.

I looked through all of the supplementary data and on GEO but didn't see them. I apologize if I overlooked something.

Thanks, Dante

noamaus commented 5 years ago

Hello,

Sorry for this. Please find these scores: Sample Treatment IMPRES response 115-031814 anti-CTLA-4 4 NR 115-041514 anti-CTLA-4 4 NR 148-6-5-14_S9 anti-PD-1 5 R 208-10-22-14_S12 anti-CTLA-4 5 NR 208-3-11-15_S13 anti-PD-1 5 NR 208-5-13-15_S14 anti-PD-1 6 NR 208-9-10-14_S11 anti-CTLA-4 4 NR 272-020415 anti-CTLA-4 4 NR 272-121914 anti-CTLA-4 4 NR 39-10-31-14_S17 anti-PD-1 4 NR 39-3-31-14_S15 anti-PD-1 6 NR 39-8-25-14_S16 anti-PD-1 4 NR 42-10-17-14_S3 anti-PD-1 4 NR 42-11-24-14_S4 anti-PD-1 6 NR 42-12-30-14_S5 anti-PD-1 6 NR 422-092815 anti-PD-1+anti-CTLA-4 5 R 422-110515 anti-PD-1+anti-CTLA-4 7 R 62-10-2-13_S6 anti-PD-1+anti-CTLA-4 3 NR 62-5-27-14_S7 anti-PD-1+anti-CTLA-4 3 NR 62-7-8-14_S8 anti-PD-1 7 NR MGH208_031115-1.bam anti-PD-1 5 NR MGH208_031115-2.bam anti-PD-1 4 NR MGH208_051315.bam anti-PD-1 4 NR MGH39_033114.bam anti-PD-1 3 NR MGH39_082514-1.bam anti-PD-1 4 NR MGH39_082514-2.bam anti-PD-1 4 NR MGH39_082514-3.bam anti-PD-1 4 NR MGH39_082514-4.bam anti-PD-1 4 NR MGH39_082514-5.bam anti-PD-1 4 NR MGH39_103114.bam anti-PD-1 4 NR MGH42_101714.bam anti-PD-1 2 NR MGH42_101714_1.bam anti-PD-1 5 NR MGH42_112414.bam anti-PD-1 5 NR MGH42_112414_1.bam anti-PD-1 5 NR MGH42_122914-1.bam anti-PD-1 4 NR MGH42_122914-2_1.bam anti-PD-1 4 NR MGH42_122914_1.bam anti-PD-1 4 NR

I hope this helps and best regards Noam

On Tue, Nov 27, 2018 at 4:02 PM Dante Bortone notifications@github.com wrote:

Hi,

Are the IMPRES scores for the MGH samples (Ruppen et.al 2018) available anywhere? Supplementary table 9 (41591_2018_157_MOESM6_ESM.xlsx) has a the IMPRES scores for all datasets except this one.

I looked through all of the supplementary data and on GEO but didn't see them. I apologize if I overlooked something.

Thanks, Dante

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DanteBortone commented 5 years ago

Great! Thank you for putting this together.

Kind regards, Dante

On Nov 29, 2018, at 4:42 PM, noamaus notifications@github.com wrote:

Hello,

Sorry for this. Please find these scores: Sample Treatment IMPRES response 115-031814 anti-CTLA-4 4 NR 115-041514 anti-CTLA-4 4 NR 148-6-5-14_S9 anti-PD-1 5 R 208-10-22-14_S12 anti-CTLA-4 5 NR 208-3-11-15_S13 anti-PD-1 5 NR 208-5-13-15_S14 anti-PD-1 6 NR 208-9-10-14_S11 anti-CTLA-4 4 NR 272-020415 anti-CTLA-4 4 NR 272-121914 anti-CTLA-4 4 NR 39-10-31-14_S17 anti-PD-1 4 NR 39-3-31-14_S15 anti-PD-1 6 NR 39-8-25-14_S16 anti-PD-1 4 NR 42-10-17-14_S3 anti-PD-1 4 NR 42-11-24-14_S4 anti-PD-1 6 NR 42-12-30-14_S5 anti-PD-1 6 NR 422-092815 anti-PD-1+anti-CTLA-4 5 R 422-110515 anti-PD-1+anti-CTLA-4 7 R 62-10-2-13_S6 anti-PD-1+anti-CTLA-4 3 NR 62-5-27-14_S7 anti-PD-1+anti-CTLA-4 3 NR 62-7-8-14_S8 anti-PD-1 7 NR MGH208_031115-1.bam anti-PD-1 5 NR MGH208_031115-2.bam anti-PD-1 4 NR MGH208_051315.bam anti-PD-1 4 NR MGH39_033114.bam anti-PD-1 3 NR MGH39_082514-1.bam anti-PD-1 4 NR MGH39_082514-2.bam anti-PD-1 4 NR MGH39_082514-3.bam anti-PD-1 4 NR MGH39_082514-4.bam anti-PD-1 4 NR MGH39_082514-5.bam anti-PD-1 4 NR MGH39_103114.bam anti-PD-1 4 NR MGH42_101714.bam anti-PD-1 2 NR MGH42_101714_1.bam anti-PD-1 5 NR MGH42_112414.bam anti-PD-1 5 NR MGH42_112414_1.bam anti-PD-1 5 NR MGH42_122914-1.bam anti-PD-1 4 NR MGH42_122914-2_1.bam anti-PD-1 4 NR MGH42_122914_1.bam anti-PD-1 4 NR

I hope this helps and best regards Noam

On Tue, Nov 27, 2018 at 4:02 PM Dante Bortone notifications@github.com wrote:

Hi,

Are the IMPRES scores for the MGH samples (Ruppen et.al 2018) available anywhere? Supplementary table 9 (41591_2018_157_MOESM6_ESM.xlsx) has a the IMPRES scores for all datasets except this one.

I looked through all of the supplementary data and on GEO but didn't see them. I apologize if I overlooked something.

Thanks, Dante

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