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noamteyssier
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gia
gia: Genomic Interval Arithmetic
https://noamteyssier.github.io/gia/
MIT License
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GIA 0.2.0
#69
noamteyssier
closed
5 months ago
0
Reproduce bedtools methods
#68
noamteyssier
opened
8 months ago
3
Autodetermine file format
#67
noamteyssier
closed
8 months ago
1
Mix file formats when applicable
#66
noamteyssier
closed
8 months ago
1
Retain BED6 format?
#65
aseveritt
closed
5 months ago
4
53 bed12 support
#64
noamteyssier
closed
10 months ago
0
62 use rayon for parallel sorting of interval sets
#63
noamteyssier
closed
1 year ago
0
Use rayon for parallel sorting of interval sets
#62
noamteyssier
closed
1 year ago
0
Arbitrary number of inputs to functions
#61
noamteyssier
closed
5 months ago
1
performance claims
#60
sjneph
closed
1 year ago
6
Adding gzip compression detection
#59
noamteyssier
closed
1 year ago
0
Adding gzip compression detection for reading and bgzip compression for write.
#58
mrvollger
closed
1 year ago
1
55 named genome file support
#57
noamteyssier
closed
1 year ago
0
Add support for compressed files
#56
mrvollger
closed
1 year ago
5
named genome file support
#55
noamteyssier
closed
1 year ago
0
BED12 Support
#53
noamteyssier
closed
10 months ago
1
Support for intersect -wo flag
#52
noamteyssier
opened
1 year ago
0
Increased File Type Support
#51
noamteyssier
closed
5 months ago
1
bed12 support, -wo flag support
#50
ddubocan
closed
5 months ago
2
VCF support
#49
jjfarrell
closed
5 months ago
2
47 bed6 sort has incorrect index into retranslater
#48
noamteyssier
closed
1 year ago
0
bed6 sort has incorrect index into retranslater
#47
noamteyssier
closed
1 year ago
0
45 add badges to readme
#46
noamteyssier
closed
1 year ago
0
add badges to readme
#45
noamteyssier
closed
1 year ago
0
chore: Update Cargo.toml to include required keywords for publish on …
#44
noamteyssier
closed
1 year ago
0
Prepare cargo.toml for publish
#43
noamteyssier
closed
1 year ago
0
docs: added documentation on README
#42
noamteyssier
closed
1 year ago
0
Prepare readme for release
#41
noamteyssier
closed
1 year ago
0
39 use consistent naming for format shorthand
#40
noamteyssier
closed
1 year ago
0
Use consistent naming for format shorthand
#39
noamteyssier
closed
1 year ago
0
32 complete support for bed6 file format
#38
noamteyssier
closed
1 year ago
0
34 incorporate natural language sorting in sort
#37
noamteyssier
closed
1 year ago
0
33 use translator in read write methods
#36
noamteyssier
closed
1 year ago
0
Incorporate Streamed Methods
#35
noamteyssier
opened
1 year ago
0
Incorporate natural language sorting in sort
#34
noamteyssier
closed
1 year ago
0
Use Translator in Read / Write methods
#33
noamteyssier
closed
1 year ago
0
Complete support for BED6 File Format
#32
noamteyssier
closed
1 year ago
3
Stranded Methods
#31
noamteyssier
closed
5 months ago
2
29 set up get fasta to use a stream instead of loading all intervals into memory
#30
noamteyssier
closed
1 year ago
0
set up get-fasta to use a stream instead of loading all intervals into memory
#29
noamteyssier
closed
1 year ago
0
27 use faiquery as fai query backend
#28
noamteyssier
closed
1 year ago
0
use faiquery as fai query backend
#27
noamteyssier
closed
1 year ago
0
25 build up and mdbook and start working on documentation
#26
noamteyssier
closed
1 year ago
0
build up and mdbook and start working on documentation
#25
noamteyssier
closed
1 year ago
0
organized commands alphabetically for clarity
#24
noamteyssier
closed
1 year ago
0
reorder commands alphabetically
#23
noamteyssier
closed
1 year ago
0
21 try using a memory mapped fasta instead of opening a bunch of files
#22
noamteyssier
closed
1 year ago
0
try using a memory mapped fasta instead of opening a bunch of files
#21
noamteyssier
closed
1 year ago
0
19 implement closest functionality
#20
noamteyssier
closed
1 year ago
0
implement closest functionality
#19
noamteyssier
closed
1 year ago
0
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