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noise42 / BRIO

BRIO webserver - Helmer-Citterich Lab
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Update the input format description #5

Closed AndreaGuarracino closed 4 years ago

AndreaGuarracino commented 4 years ago

After the updates to manage the FASTA files with lines of max 80 characters, the input is now processed in "blocks":

noise42 commented 4 years ago

I don't get it: does it mean that all the sequences must be before all the structures?

AndreaGuarracino commented 4 years ago

Yes. The first line has to be the header (>some text). The second line has to be a valid RNA sequence (ribonucleotides) that can continue in the following lines, until an other type of sequence is found. The remaining lines are optional: if they are present, then they have to be all valid secondary structure sequences (dot-brackets alphabet).

noise42 commented 4 years ago

updated