add all the experimental techniques and check them

[AndreaGuarracino]

For now

• CLIPseq <- hg19 and mm9
• ENCFF <- maybe hg19
• HITSCLIP <- hg19 and mm9
• PARCLIP <- hg19 and mm9

The specie is missing in the filenames which start with ENCFF*. Moreover, we have also the following files without the specie in their name:

- motifs_nuc/CLIPseq_SLBP_HMW_CDS_m1_run1.nuc.txt
- motifs_nuc/CLIPseq_SLBP_HMW_CDS_m2_run1.nuc.txt
- motifs_nuc/CLIPseq_SLBP_HMW_CDS_m3_run1.nuc.txt
- motifs_nuc/CLIPseq_SLBP_HMW_transcript_m1_run1.nuc.txt
- motifs_nuc/CLIPseq_SLBP_HMW_transcript_m2_run1.nuc.txt
- motifs_nuc/CLIPseq_SLBP_HMW_transcript_m3_run2.nuc.txt
- motifs_nuc/CLIPseq_SLBP_HMW_UTR_m1_run2.nuc.txt
- motifs_nuc/CLIPseq_SLBP_HMW_UTR_m2_run2.nuc.txt
- motifs_nuc/CLIPseq_SLBP_HMW_UTR_m3_run2.nuc.txt
- motifs_nuc/CLIPseq_SLBP_LMW_CDS_m1_run2.nuc.txt
- motifs_nuc/CLIPseq_SLBP_LMW_CDS_m2_run1.nuc.txt
- motifs_nuc/CLIPseq_SLBP_LMW_CDS_m3_run2.nuc.txt
- motifs_nuc/CLIPseq_SLBP_LMW_transcript_m1_run1.nuc.txt
- motifs_nuc/CLIPseq_SLBP_LMW_transcript_m2_run2.nuc.txt
- motifs_nuc/CLIPseq_SLBP_LMW_transcript_m3_run1.nuc.txt
- motifs_nuc/CLIPseq_SLBP_LMW_UTR_m1_run2.nuc.txt
- motifs_nuc/CLIPseq_SLBP_LMW_UTR_m2_run1.nuc.txt
- motifs_nuc/CLIPseq_SLBP_LMW_UTR_m3_run1.nuc.txt

- motifs_str/CLIPseq_SLBP_HMW_CDS_m1_run2.txt
- motifs_str/CLIPseq_SLBP_HMW_CDS_m2_run1.txt
- motifs_str/CLIPseq_SLBP_HMW_CDS_m3_run1.txt
- motifs_str/CLIPseq_SLBP_HMW_transcript_m1_run2.txt
- motifs_str/CLIPseq_SLBP_HMW_transcript_m2_run1.txt
- motifs_str/CLIPseq_SLBP_HMW_transcript_m3_run1.txt
- motifs_str/CLIPseq_SLBP_HMW_UTR_m1_run2.txt
- motifs_str/CLIPseq_SLBP_HMW_UTR_m2_run2.txt
- motifs_str/CLIPseq_SLBP_HMW_UTR_m3_run2.txt
- motifs_str/CLIPseq_SLBP_LMW_CDS_m1_run2.txt
- motifs_str/CLIPseq_SLBP_LMW_CDS_m2_run2.txt
- motifs_str/CLIPseq_SLBP_LMW_CDS_m3_run1.txt
- motifs_str/CLIPseq_SLBP_LMW_transcript_m1_run2.txt
- motifs_str/CLIPseq_SLBP_LMW_transcript_m2_run2.txt
- motifs_str/CLIPseq_SLBP_LMW_transcript_m3_run1.txt
- motifs_str/CLIPseq_SLBP_LMW_UTR_m1_run2.txt
- motifs_str/CLIPseq_SLBP_LMW_UTR_m2_run1.txt
- motifs_str/CLIPseq_SLBP_LMW_UTR_m3_run2.txt

[noise42]

from the paper :

From ENCODE, we collected 223 eCLIP experiments only from human (hg19)

[noise42]

• Each file with

CLIPseq_SLBPLMW CLIPseq_SLBPHMW

is hg19

• I'll add another thing:

CLIPseq = HITS-CLIP

CLIPseq is a generic name, the specific tech is HITS-CLIP