To install FLOWMAPR, i need to install Rclusterpp: install_github("nolanlab/Rclusterpp")
Please see session info below and the error message I get from Rstudio. Can anyone please help?
(I have both flowCore and devtools libraries loaded)
Best,
Stein-Erik
######################
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
[Workspace loaded from ~/Dropbox/Rstudio/FLOWMAPR/.RData]
library("flowCore")
library(devtools)
install_github("nolanlab/Rclusterpp")
Downloading GitHub repo nolanlab/Rclusterpp@master
✔ checking for file ‘/private/var/folders/_8/fpg279xx6lg2r8dhph4jpl0d91tsw8/T/RtmpZUdHXN/remotesa0db510b1c2b/nolanlab-Rclusterpp-740cb0b/DESCRIPTION’ ...
─ preparing ‘Rclusterpp’:
✔ checking DESCRIPTION meta-information ...
─ cleaning src
─ running ‘cleanup’
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ building ‘Rclusterpp_0.2.4.tar.gz’
Warning: invalid uid value replaced by that for user 'nobody'
Warning: invalid gid value replaced by that for user 'nobody'
Installing package into ‘/Users/mmasg/Library/R/3.5/library’
(as ‘lib’ is unspecified)
installing source package ‘Rclusterpp’ ...
** libs
/opt/local/bin/g++-mp-4.8 -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/mmasg/Library/R/3.5/library/Rcpp/include" -I"/Users/mmasg/Library/R/3.5/library/RcppEigen/include" -I/usr/local/include -I../inst/include -fopenmp -fPIC -Wall -g -O2 -c hclust.cpp -o hclust.o
In file included from /opt/local/include/gcc48/c++/bits/postypes.h:40:0,
from /opt/local/include/gcc48/c++/bits/char_traits.h:40,
from /opt/local/include/gcc48/c++/string:40,
from /opt/local/include/gcc48/c++/stdexcept:39,
from hclust.cpp:1:
/opt/local/include/gcc48/c++/cwchar:44:19: fatal error: wchar.h: No such file or directory
removing ‘/Users/mmasg/Library/R/3.5/library/Rclusterpp’
Error in i.p(...) :
(converted from warning) installation of package ‘/var/folders/_8/fpg279xx6lg2r8dhph4jpl0d91tsw8/T//RtmpZUdHXN/filea0db1eb74d3b/Rclusterpp_0.2.4.tar.gz’ had non-zero exit status
Hi,
To install FLOWMAPR, i need to install Rclusterpp: install_github("nolanlab/Rclusterpp")
Please see session info below and the error message I get from Rstudio. Can anyone please help?
(I have both flowCore and devtools libraries loaded)
Best, Stein-Erik
######################
R version 3.5.3 (2019-03-11) -- "Great Truth" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
[Workspace loaded from ~/Dropbox/Rstudio/FLOWMAPR/.RData]
Installing package into ‘/Users/mmasg/Library/R/3.5/library’ (as ‘lib’ is unspecified)
include
compilation terminated. make: *** [hclust.o] Error 1 ERROR: compilation failed for package ‘Rclusterpp’