Unable to install Citrus

[amirmku]

After installing all the prerequisite module as asked when I finally tried installing Citrus in R

install_github('nolanlab/citrus') it showed me an error "Downloading github repo nolanlab/citrus@master Installing citrus '/Library/Frameworks/R.framework/Resources/bin/R' --vanilla CMD INSTALL \ '/private/var/folders/5l/qhqdkfxj1hb135tl_d7vqlv40000gr/T/RtmpNHmscc/devtools40c243c58382/nolanlab-citrus-a0ab57a' \ --library='/Library/Frameworks/R.framework/Versions/3.0/Resources/library' \ --install-tests

• installing source package ‘citrus’ ... libs c++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I../inst/include -fPIC -mtune=core2 -g -O2 -c upsample.cc -o upsample.o c++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o citrus.so upsample.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/3.0/Resources/library/citrus/libs R inst preparing package for lazy loading Error : .onLoad failed in loadNamespace() for 'rgl', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rgl/libs/rgl.so': dlopen(/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rgl/libs/rgl.so, 6): Library not loaded: /usr/X11/lib/libGLU.1.dylib Referenced from: /Library/Frameworks/R.framework/Versions/3.0/Resources/library/rgl/libs/rgl.so Reason: image not found Error : package ‘flowCore’ could not be loaded ERROR: lazy loading failed for package ‘citrus’
• removing ‘/Library/Frameworks/R.framework/Versions/3.0/Resources/library/citrus’ Error: Command failed (1)"

Can I anyone help me in resolving the issue

[rbruggner]

Have you installed XQuartz? http://stackoverflow.com/questions/9878693/error-in-loading-rgl-package-with-mac-os-x

[amirmku]

Hi Thanks a lot, after installing Xquartz, I could get citrus. However when I am trying to launch using command > citrus.launchUI() it opened a popup window (not sure, what to do next to open GUI of Citrus) and also display loading required package parallel loading required package reshape2 Please find the snapshot attached. Sorry I am totally naive to coding so really dont understand what does these command mean. Would highly appreciate your help in resolving this issue further.

[rbruggner]

That looks like it’s functioning correctly. Please follow the usage guide for directions on how to proceed: https://github.com/nolanlab/citrus/wiki/Getting-Started#Starting_a_Citrus_analysis https://github.com/nolanlab/citrus/wiki/Getting-Started#Starting_a_Citrus_analysis

On Nov 13, 2016, at 5:02 PM, amirmku notifications@github.com wrote:

Hi Thanks a lot, after installing Xquartz, I could get citrus. However when I am trying to launch using command > citrus.launchUI() it opened a popup window (not sure, what to do next to open GUI of Citrus) and also display loading required package parallel loading required package reshape2 Please find the snapshot attached. Sorry I am totally naive to coding so really dont understand what does these command mean. Would highly appreciate your help in resolving this issue further.

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