Feature calculation takes too long

nolanlab / citrus

Citrus Development Code

GNU General Public License v3.0

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Feature calculation takes too long #127

Closed cbligaard closed 2 years ago

cbligaard commented 5 years ago

Hi Citrus-team,

I have an experiment with a 120 CyTOF files and I would like to run Citrus to analyze them. I can manage to get through the clustering by downsampling, but the citrus.calculateFoldFeatureSet just never finishes for me (I have given it more than 24 hours). Do you have any suggestions for how I can get beyond this?

Best, Christina

rbruggner commented 5 years ago

Hi Christina,

Is the CPU "doing something" during that long runtime (e.g. is it still calculating features/values) or is the related CPU usage "zero" when the program appears to be running definitely?