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nolanlab / citrus

Citrus Development Code
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Error in xy.coords(x, y, xlabel, ylabel, log) : #130

Open mcpitman2 opened 4 years ago

mcpitman2 commented 4 years ago

Hi, I'm completely new to R. I have installed and run Citrus 0.8 on R 4.0.0 using the shiny GUI. However, every time I try to run an analysis I get an error message within R saying "Error in xy.coords(x, y, xlabel, ylabel, log) : 'x' and 'y' lengths differ In addition: Warning message: In if (class(x) == "dist") { : the condition has length > 1 and only the first element will be used"

Any suggestion as to what I could be doing wrong? It happens even when I follow all of the instructions at https://github.com/nolanlab/citrus/wiki/Synthetic-Example-1

Thanks, Matthew

nvall commented 3 years ago

Hi Matthew, I encountered the same issue this week. You may try to use an older version of R, it works with 3.6.3. Hope it will help.

mcpitman2 commented 3 years ago

Thanks very much nvall. Yes, it works with version 3.6.3 for me too.

Kind regards

Matthew

chsher commented 3 years ago

Hi, how did you install Rclusterpp? I am using version 3.6.3 and receive the following error message when I try to install Rclusterpp:

Warning message: package ‘Rclusterpp’ is not available (for R version 3.6.3)

mcpitman2 commented 3 years ago

I just followed the instructions at https://github.com/nolanlab/citrus/wiki/Installing-Citrus

Specifically: install_github("nolanlab/Rclusterpp")

I don't recall having any issues.

JC19C commented 2 years ago

Hi, Do you have an insight about the cause of the issue here (FCS file format?), or an alternative solution?

As I have the same error on R 4.1.3, and a RStudio fatal error with crash on R 3.6.3

Thanks for your help! J

rbruggner commented 2 years ago

I am working on some package maintenance now - seems like a good time to update for compatibility with R 4.0 since it's been out for about 2 years at this point :)

JC19C commented 2 years ago

Ok, great, thank you, let me know how it goes, and if I can help by providing error messages don't hesitate! Thanks, Jonathan

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Le mar. 26 avr. 2022 à 17:38, Robert Bruggner @.***> a écrit :

I am working on some package maintenance now - seems like a good time to update for compatibility with R 4.0 since it's been out for about 2 years at this point :)

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nvall commented 2 years ago

Hi, Do you have an insight about the cause of the issue here (FCS file format?), or an alternative solution? As I have the same error on R 4.1.3, and a RStudio fatal error with crash on R 3.6.3

@JC19C to avoid RStudio crashes, you should consider run R directly from a terminal and go back to your v4 when you're done with Citrus. Try RSwitch software to change you current default R version.

I am working on some package maintenance now - seems like a good time to update for compatibility with R 4.0 since it's been out for about 2 years at this point :)

@rbruggner send me a message if you need help.

Best, Nicolas

rbruggner commented 2 years ago

@JC19C Give the latest master branch a pull and lmk if it fixes the issue?

JC19C commented 1 year ago

It's working perfectly thanks!

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Le ven. 29 avr. 2022 à 00:38, Robert Bruggner @.***> a écrit :

@JC19C https://github.com/JC19C Give the latest master branch a pull and lmk if it fixes the issue?

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