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nolanlab / citrus

Citrus Development Code
GNU General Public License v3.0
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add run-time for analysis #57

Open tkras opened 10 years ago

tkras commented 10 years ago

I would be interesting, although not in anyway necessary, to get the time elapsed for each analysis at the end of the analysis. I have a pretty big data set and adding multiclass analyses seems to have increased run-time quite a lot.

rbruggner commented 10 years ago

I can definitely look into adding that. If you’re trying to guess runtimes ahead of time, the current GUI tries to estimate the maximum number of cells that it will cluster based on the parameters that you’ve specified. You can then look up some rough runtimes that I’ve posted on the Rclusterpp page here:

https://github.com/nolanlab/Rclusterpp/wiki/Clustering-Benchmarks-with-Synthetic-Data

Clustering isn’t the only part of the analysis but it’s definitely the part that takes the longest (by far and away).

On Apr 18, 2014, at 12:05 PM, tkras notifications@github.com wrote:

I would be interesting, although not in anyway necessary, to get the time elapsed for each analysis at the end of the analysis. I have a pretty big data set and adding multiclass analyses seems to have increased run-time quite a lot.

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