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nolanlab / citrus

Citrus Development Code
GNU General Public License v3.0
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citrus "missing values and NaN's not allowed if 'na.rm' is FALSE" error #60

Closed jmarose21 closed 10 years ago

jmarose21 commented 10 years ago

I've been trying to mess around in citrus and figure out how to analyze .fcs files. Unfortunately, every time I try to run citrus, I get an error showing up in R. These are the last two lines that appear:

missing values and NaN's not allowed if 'na.rm' is FALSE Error during wrapup: cannot open the connection

Has anyone else had this problem? Is it a problem with my .fcs files, or with some setting I have in R or citrus?

Thanks.

rbruggner commented 10 years ago

In the citrusOutput directory that’s created (should be in the same directory as the data), there should be a file called citrusOutput.log and runCitrus.R. Can you send both in an e-mail to bruggner@stanford.edu?

-R

On Jun 6, 2014, at 3:07 PM, jmarose21 notifications@github.com wrote:

I've been trying to mess around in citrus and figure out how to analyze .fcs files. Unfortunately, every time I try to run citrus, I get an error showing up in R. These are the last two lines that appear:

missing values and NaN's not allowed if 'na.rm' is FALSE Error during wrapup: cannot open the connection

Has anyone else had this problem? Is it a problem with my .fcs files, or with some setting I have in R or citrus?

Thanks.

— Reply to this email directly or view it on GitHub.

rbruggner commented 10 years ago

Related to a small number of samples analyzed in each group.