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Citrus Development Code
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not enough application memory to run Citrus #63

Closed horowitzamir closed 10 years ago

horowitzamir commented 10 years ago

Hi Rob,

Wondering if you or anyone has run into the problem where r prompts the error message (after initiating Citrus analysis) that there's not enough application memory to complete the job. When going into the activity monitor on the Mac, the "kernel_task" is reading ~10Gb which is clearly eating up all available memory. Is there a simple fix? When i reboot the computer, the kernel_task goes back down to ~900Mb. But when Citrus starts up, the kernel_task shoots back up.

any thoughts?

rbruggner commented 10 years ago

Hrm.. I haven't really tested the memory limits of Citrus, actually. How much RAM is in the computer that you're running it on?

----- Original Message ----- From: "horowitzamir" notifications@github.com To: "nolanlab/citrus" citrus@noreply.github.com Sent: Monday, July 28, 2014 12:23:26 PM Subject: [citrus] not enough application memory to run Citrus (#63)

Hi Rob,

Wondering if you or anyone has run into the problem where r prompts the error message (after initiating Citrus analysis) that there's not enough application memory to complete the job. When going into the activity monitor on the Mac, the "kernel_task" is reading ~10Gb which is clearly eating up all available memory. Is there a simple fix? When i reboot the computer, the kernel_task goes back down to ~900Mb. But when Citrus starts up, the kernel_task shoots back up.

any thoughts?

Reply to this email directly or view it on GitHub: https://github.com/nolanlab/citrus/issues/63

horowitzamir commented 10 years ago

OK, thanks Rob. I have 16 Gb ram to play with, so should be plenty. Also, it is a sudden problem and occurring on runs of sampling 1000 cells. Ive previously on this computer not had problems sampling 10,000 cells.

I will let you know if I get this resolved.

Thanks

Amir Horowitz, PhD Postdoctoral Fellow / Departments of Structural Biology and Microbiology & Immunology / Parham Laboratory / Stanford University School of Medicine / Fairchild Building / Room D100 / 299 Campus Drive West, Stanford CA 94305-5126 / http://www.stanford.edu/group/parhamlab

On Jul 28, 2014, at 1:23 PM, Robert Bruggner notifications@github.com wrote:

Hrm.. I haven't really tested the memory limits of Citrus, actually. How much RAM is in the computer that you're running it on?

----- Original Message ----- From: "horowitzamir" notifications@github.com To: "nolanlab/citrus" citrus@noreply.github.com Sent: Monday, July 28, 2014 12:23:26 PM Subject: [citrus] not enough application memory to run Citrus (#63)

Hi Rob,

Wondering if you or anyone has run into the problem where r prompts the error message (after initiating Citrus analysis) that there's not enough application memory to complete the job. When going into the activity monitor on the Mac, the "kernel_task" is reading ~10Gb which is clearly eating up all available memory. Is there a simple fix? When i reboot the computer, the kernel_task goes back down to ~900Mb. But when Citrus starts up, the kernel_task shoots back up.

any thoughts?

Reply to this email directly or view it on GitHub: https://github.com/nolanlab/citrus/issues/63 — Reply to this email directly or view it on GitHub.