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nolanlab / citrus

Citrus Development Code
GNU General Public License v3.0
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running citrus #78

Closed nncytof closed 9 years ago

nncytof commented 9 years ago

Hi, I'm trying to run Citrus using the instructions listed on this website: https://github.com/nolanlab/citrus/wiki/Installing-Citrus#Installation I am not sure how to input the following code into R: shell> mkdir ~/.R shell> echo "CXX=c++ -arch x86_64" >> ~/.R/Makevars

Also, when I type the following code, I get this message: Username parameter is deprecated. Please use nolanlab/citrus. R> install.packages("devtools") R> library("devtools") R> install_github('citrus',username='nolanlab')

Wondering if you could help me to resolve this problem? Thank you!

shirangi commented 9 years ago

I am facing the same issue... anyone can help with this? Thank you

rbruggner commented 9 years ago

Hi all,

For your first question, the commands that are preceded by the words shell> should be entered into a terminal prompt (shell), not in R. To enter, open the terminal application and enter the commands following the shell>.

WRT the second question about the installation warning, I don't think that causes installation to fail, but if it does, try the command:

install_github("nolanlab/citrus")

... instead.