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nolanlab / cytofCore

R package for working with CyToF data
GNU General Public License v3.0
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No Package called "CytofCore" #3

Open perdu34 opened 9 years ago

perdu34 commented 9 years ago

Following the installation instructions:

R>install.packages("devtools") R>install.packages("XML") R>library("devtools") R>source("http://bioconductor.org/biocLite.R") R>biocLite("flowCore") R>library("XML") R>library("flowCore") R>install_github("nolanlab/cytofCore")

I get the following error message:

install_github("nolanlab/cytofCore") Downloading github repo nolanlab/cytofCore@master Installing cytofCore Skipping 1 packages not available: flowCore "C:/PROGRA~1/R/R-32~1.1/bin/x64/R" --no-site-file --no-environ --no-save \ --no-restore CMD INSTALL \ "C:/Users/slblack/AppData/Local/Temp/RtmpCYBaoS/devtools3f4421fb1ef6/nolanlab-cytofCore-d9cd1e0" \ --library="\icnas3.cc.ic.ac.uk/slblack/R/win-library/3.2" --install-tests

install_github("nolanlab/cytofCore") Downloading github repo nolanlab/cytofCore@master Installing cytofCore Skipping 1 packages not available: flowCore "C:/PROGRA~1/R/R-32~1.1/bin/x64/R" --no-site-file --no-environ --no-save \ --no-restore CMD INSTALL \ "C:/Users/slblack/AppData/Local/Temp/RtmpCYBaoS/devtools3f4421fb1ef6/nolanlab-cytofCore-d9cd1e0" \ --library="\icnas3.cc.ic.ac.uk/slblack/R/win-library/3.2" --install-tests

  • installing source package 'cytofCore' ... * R * inst * preparing package for lazy loading * help ** installing help indices * building package indices \ testing if installed package can be loaded Warning in library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) :there is no package called 'cytofCore' Error: loading failed Execution halted ERROR: loading failed removing '\icnas3.cc.ic.ac.uk/slblack/R/win-library/3.2/cytofCore' Error: Command failed (1)

and I am at a complete loss as to why it's not installing. I have loaded the .zip file from my local drive and I get library(cytofCore-master) as an auto-fill option but again, cytofCore is not loading. Changing to " makes no difference as does just using cytoCore

any help would be appreciated

perdu34 commented 9 years ago

I should also mention that i get the same error message when installing MouseImmuneReference from the Nolan lab folder