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nolanlab / cytofCore

R package for working with CyToF data
GNU General Public License v3.0
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Issue with cytofCore function #5

Closed horowitzamir closed 8 years ago

horowitzamir commented 8 years ago

I am having a problem using the cytofCore function. I have gone through step by step from your github page. When i finally type the command:

cytofCore.updatePanel()

I get the following error message:

Error : .onLoad failed in loadNamespace() for 'tcltk', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.1/Resources/library/tcltk/libs/tcltk.so': dlopen(/Library/Frameworks/R.framework/Versions/3.1/Resources/library/tcltk/libs/tcltk.so, 10): Library not loaded: /usr/X11/lib/libXft.2.dylib Referenced from: /usr/local/lib/libtk8.6.dylib Reason: image not found Error: package or namespace load failed for ‘tcltk’

Can soeone please help me?

Thanks Amir

esimonds commented 8 years ago

Hi Amir,

I think this error indicates that X11 (now called XQuartz) is not installed on your system. This is a Mac-specific issue. X11 used to be installed by default with OS X, but later version (starting with Yosemite, I believe) dropped it.

Please try installing XQuartz as described here: https://support.apple.com/en-us/HT201341

...and please report your success or failure. Thanks!

horowitzamir commented 8 years ago

Hi Erin,

Thanks so much for getting back to me. And sorry for the delayed response. I really appreciate your help. This was indeed the problem, and now it is resolved.

Thanks again. best wishes Amir

Amir Horowitz, PhD Research Scientist / Departments of Structural Biology and Microbiology & Immunology / Parham Laboratory / Stanford University School of Medicine / Fairchild Building / Room D100 / 299 Campus Drive West, Stanford CA 94305-5126 / http://www.stanford.edu/group/parhamlab

On Mar 2, 2016, at 1:06 PM, Erin Simonds notifications@github.com<mailto:notifications@github.com> wrote:

Hi Amir,

I think this error indicates that X11 (now called XQuartz) is not installed on your system. This is a Mac-specific issue. X11 used to be installed by default with OS X, but later version (starting with Yosemite, I believe) dropped it.

Please try installing XQuartz as described here: https://support.apple.com/en-us/HT201341

...and please report your success or failure. Thanks!

— Reply to this email directly or view it on GitHubhttps://github.com/nolanlab/cytofCore/issues/5#issuecomment-191353550.

esimonds commented 8 years ago

Awesome, thanks for the report. Closing.