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nolanlab / scaffold

scaffold
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trouble running SCAFFoLD analysis #13

Closed CNicholasMDA closed 6 years ago

CNicholasMDA commented 6 years ago

Hi, My team is having trouble running the SCAFFoLD package in R. We are using R Studio 3.4.4. The GUI returns a successful completion message, but the warning message in R Studio is:

Warning in parallel::mclapply(files.list, mc.cores = num.cores, mc.preschedule = FALSE, : 21 function calls resulted in an error

Is this an issue with the SCAFFoLD package, the Bioconductor packages, or something else? Thank you! -Courtney

CNicholasMDA commented 6 years ago

Update: still no success. I reinstalled all associated packages and this is what I am running so far: R Console version 3.4.4 FlowCore from Bioconductor version 3.6 (BiocInstaller 1.28.0) devtools from CRAN (revolutionanalytics.com) install_github("nolanlab/scaffold") running all in a Mac OS environment, with C++ compiler (XCode) installed...

also getting same error using grappolo, unfortunately

pfgherardini commented 6 years ago

Please post this issue in the grappolo package, because that is what I am mantaining right now. Also please include data to reproduce the problem, and the exact code you are running. I suspect this is a problem with the way you are configuring the analysis