search

nolanlab / spade

SPADE: Spanning Tree Progression of Density Normalized Events
Other
46 stars 23 forks source link

Error in Spade.driver: unused argument (downsampling_samples = DOWNSAMPLED_EVENTS) #112

Closed labrett closed 8 years ago

labrett commented 9 years ago

Hello,

I know this has been brought up before, but I am not aware of the solution. When using cytoscape 2.8.3, I get an error when trying to run the SPADE algorithm saying:

Error in SPADE.driver(FILE_TO_PROCESS, file_pattern = "*.fcs", out_dir = OUTPUT_DIR, : unused argument (downsampling_samples = DOWNSAMPLED_EVENTS)

I believe it was stated that this would be fixed in version 3, but when I use version 3 I get an error when installing SPADE through R:

SPADE.installPlugin("/Applications/Cytoscape_v3.0.0/") Error in if (!file.exists(target_path) && !file.info(target_path)$isdir) { : missing value where TRUE/FALSE needed

How can I resolve this issue?

zbjornson commented 9 years ago

Hello, Please see this answer: https://github.com/nolanlab/spade/issues/95#issuecomment-46481966