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nolanlab
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spade
SPADE: Spanning Tree Progression of Density Normalized Events
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downsampling_samples unused arguments
#96
cytospade
closed
10 years ago
2
Error in spade.driver
#95
Frekth
closed
8 years ago
8
Help with SPADE plugin with Cytoscape 2.8.3 - how to colour and creat network distinguishing cells populations
#94
agamalisz
closed
10 years ago
0
Update fcs.R
#93
uneme
opened
10 years ago
2
Error: C stack is nearing limit
#92
ricepaddydragon
closed
8 years ago
1
Version 1.10 of spade appears to be non-compatible with Cytoscape 2.8.x
#91
mlinderm
closed
8 years ago
12
Statistics tables should include x/y coordinates
#90
tjchen
opened
10 years ago
0
Improvement Request: downsample to the maximum of either the file event count or target
#89
tjchen
opened
10 years ago
2
issue installing Spade plugin in R (windows install)
#88
dmoccia
closed
10 years ago
2
downsampling error Windows-specific (similar to issue 64)
#87
beefpepsi
closed
10 years ago
2
Issue installing spade
#86
AlixDahirel
opened
10 years ago
0
Switch from graphlet markup language to graphml
#85
zbjornson
closed
8 years ago
0
status of cyto
#84
viostorm
closed
10 years ago
1
Calculate fold change of percent total and count attributes
#83
zbjornson
closed
10 years ago
3
Cytospade question/issue
#82
dbottomly
closed
10 years ago
2
SPADE.driver running issue
#81
ghost
opened
10 years ago
2
cytospade issue
#80
Mepherotus
closed
8 years ago
2
cytospade plugin bug
#79
Mepherotus
closed
10 years ago
2
R/driver.R another bad file path
#78
Mepherotus
closed
10 years ago
0
Throw a better error if the target number of nodes exceeds the number of cells after downsampling
#77
zbjornson
closed
11 years ago
0
object 'OUTPUT_DIR' not found
#76
wleepang
closed
11 years ago
4
Change clustering method to rclusterpp
#75
zbjornson
closed
11 years ago
0
Increase logging during density estimation
#74
zbjornson
closed
11 years ago
0
Update from igraph0 to igraph
#73
zbjornson
closed
11 years ago
21
Regarding different layouts and the information that the tree structure contains
#72
jtheorell
closed
11 years ago
4
Regarding changing visual styles
#71
jtheorell
closed
11 years ago
4
R and cluster_cols
#70
agregson
closed
11 years ago
1
Error in sprintf When Downsampling File
#69
agregson
closed
11 years ago
10
Specify External SPILL Matrix?
#68
agregson
closed
11 years ago
6
Problems producing PDFs
#67
nbjorkstrom
closed
8 years ago
5
Pooling FCS files
#66
Nest3
closed
11 years ago
4
Unable to get SPADE package in R
#65
Nest3
closed
11 years ago
5
Error Downsampling
#64
dougalld
closed
11 years ago
4
problems installing SPADE R package
#63
zsullivan
closed
11 years ago
1
SPADE.installPlugin("/Applications/Cytoscape_v3.0.0") fails with Error (R version 2.15.3)
#62
davidwolski
closed
11 years ago
3
Versioned backups of layout.table
#61
esimonds
closed
8 years ago
2
Execution error
#60
oncologne
closed
11 years ago
6
Plugin does not work with Cytoscape 3.0
#59
zbjornson
closed
8 years ago
0
windows installation. Impossible to select the file
#58
mmeyrand
closed
8 years ago
7
windows installation. No coloring attribute List
#57
mmeyrand
closed
11 years ago
1
Problematic behavior when FCS files have been previously analyzed using SPADE.
#56
rbruggner
closed
11 years ago
0
Pre-gating in FlowJo
#55
AEsch
closed
11 years ago
2
Error: could not find function "loadMethod"
#54
nyudanin
closed
11 years ago
1
Investigate changing dependency from iGraph0 to iGraph package
#53
rbruggner
closed
11 years ago
5
Symmetric vs assymectric coloring range
#52
AlixDahirel
closed
11 years ago
2
Error message in SPADE (R package)
#51
aostachuk
closed
12 years ago
12
Tree instability
#50
AlixDahirel
closed
12 years ago
3
analyze new data against an old tree
#49
AlixDahirel
closed
11 years ago
18
produce pdf
#48
AlixDahirel
closed
12 years ago
4
Always output the statistics tables when SPADE is run
#47
zbjornson
closed
11 years ago
1
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