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nolanlab / vortex

VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:
https://github.com/nolanlab/vortex/releases
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standalone.Xshift ArrayIndexOutOfBoundsException #18

Open Aetalas opened 6 years ago

Aetalas commented 6 years ago

Hi there,

In hopes of eventually running batch jobs on a compute cluster, I've been trying to run standalone.Xshift via command line per the instructions included in the X-shift_standalone_README.txt file included in the 26-Apr-2018 release, and I keep getting an array index out of bounds error during the "remapping" phase. I've tried changing operating systems, fcs file sets, and events_per_file counts, but I can't seem to get around it.

Brandon

java -Xmx8G -cp VorteX.jar standalone.Xshift
...
remapping 38000
remapping 39000
remapping 40000
Error exporting the data. Exiting
Reason: java.lang.ArrayIndexOutOfBoundsException: 40772, 40772
dataIO.ClusterSetToFCSExporterWithNNReassignment.exportClusterSet(ClusterSetToFCSExporterWithNNReassignment.java:100)
standalone.Xshift.main(Xshift.java:169)
akiroduey commented 3 years ago

I am also having this issue