nolanlab / vortex

VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:
https://github.com/nolanlab/vortex/releases
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Range finding for X-shift standalone #23

Open JoshuaHess12 opened 5 years ago

JoshuaHess12 commented 5 years ago

Hi,

I am starting to use X-shift standalone to bypass the GUI. I see that it is possible to run the algorithm over a range of k-values, and the standalone will automatically find the elbow point and export the associated clustering results. Is there a way to export data for a range of k-values through the standalone implementation, similar to the feature that the GUI has of storing all clustering results? We would like to be able to look further into the range finding for elbow point selection.

Thanks in advance for any help,

Josh

vishal266 commented 5 years ago

Hello @nsamusik ,

Can you please help Joshua with the above question as I do not have relevance?

Thanks, Vishal

nsamusik commented 5 years ago

Hi Joshua,

Do you need the actual clustering output or just the number of clusters for each level of K?

Nikolay

On Thu, Apr 11, 2019 at 8:03 PM vishal266 notifications@github.com wrote:

Hello @nsamusik https://github.com/nsamusik ,

Can you please help Joshua with the above question as I do not have relevance?

Thanks, Vishal

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/nolanlab/vortex/issues/23#issuecomment-482229497, or mute the thread https://github.com/notifications/unsubscribe-auth/ADacL-IUxns80SERfYAMZtQHewREPMQ2ks5vf3jhgaJpZM4ckuvB .

JoshuaHess12 commented 5 years ago

Hi Nikolay,

Thanks for the timely response. We are hoping to get the actual clustering output for each level of K. Josh

nsamusik commented 5 years ago

Hi Joshua,

The only way to get this for now is to run the algorithm passing different K settings as command line arguments.

Best,

Nikolay